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| On this page the members of the [[VRL]] record and refine their goals for the current semester. This is a living document in which [[dhl]] will provide feedback. | | On this page the members of the [[VRL]] record and refine their goals for the current semester. This is a living document in which [[dhl]] will provide feedback. See the bottom of the page for links to past plans & goals documents. |
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| = Current Schedule = | | == Current Schedule == |
| Meetings are on Monday. | | Meetings are on Wednesdays. The authoritative list is in dhl's calendar. |
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| * 2:00 - asf
| | == Current Plans and Goals (Spring '19) == |
| * 2:10 - jadrian
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| * 2:20 - radu
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| * 2:30 - Jian
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| * 2:40 - dtr
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| * 2:50 - trevor
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| * 3:00 - wzhou
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| * 3:10 - Eni
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| * 3:20 - dginsbur
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| * 3:30 -
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| * 3:40 - cad
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| * 3:50 - Laura
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| * 4:00 - Brad
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| = Current Plans and Goals = | | === [[User:David Laidlaw|David]] === |
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| == Andy ==
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| # Run flowviseval and complete IEEE Vis submission before Nov 1.
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| # Co-author NIH grant on new biology research tools
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| # [probably] Spend some time working with Huffman and Bradley and others planning improvements to $G
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| # Brain project
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| # Work with David to identify candidates for new research projects
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| == Brad == | | === [[User:Johannes Novotny|Johannes]] === |
| # make research group more productive -- products are
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| ## knowledge created
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| ## knowledge disseminated
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| ## publications published
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| ## publications downloaded and cited
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| ## code created to make publications
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| ## code used by close collaborators
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| ## code downloaded (perhaps by and used by outsiders)
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| ## group overhead reduced
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| ## knowledge created, disseminated, made impactful
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| # have work be focused on specific funded grants
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| # work independently
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| # provide sw engineering help and support to individuals in the group
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| # A+: get wrist distance-map tools usable by Trey's group, Evan in particular
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| ## registration code broken (manifolds issue)
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| ## ligament length code broken (probably manifolds again)
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| ## get manifolds into the fold; work from Cindy's source control?
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| # A: understand why Evan had to copy code rather that using our source within source control
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| # A: help direct Sidra and Wudan to improve visweb
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| ## define some google analytics goals and track our performance on them (high time on page, low exit rate, visit download pages, visit other target pages)
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| ## update site to improve those metrics, e.g., images not getting well indexed by google because of link structure
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| ## review Daniel Acevedo's web e-mail feedback for ideas
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| ## focus on brain or wrist to preserve allocability, but make globally useful
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| ## better availability of talks and videos that we make
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| ### many ppt's already around -- could be videos with a narration
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| ### a number of full videos already around, some on web, but not easily found
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| ### streaming video server?
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| ### put things on utube or other distribution sites?
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| ## create a plan to make available brain diffusion imaging data (perhaps coupling to an existing NIH-funded site)
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| ### be general enough to also support wrist data, gene data, proteomics data, etc.
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| ## is there any kind of "push" technology for sending papers to lists or individuals (spam...)
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| # A: shift to more principled software development
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| ## do so incrementally to preserve existing knowledge of users and existing code
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| ## bug tracking system?
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| ## determine some principles for sw
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| ### main shared $G is read only
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| ### explicit writable checkouts by default instead of implicit
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| ### all sw components have tests
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| ## nagging scripts
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| ### code checked out too long
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| ### missing tests
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| ### failing tests
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| ### regular tests of outside infrastructure (net flakiness, disks filling up, etc.)
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| ## address missing tests, etc
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| ## better solution for linux compiler versions
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| ### don't break windows and other platforms
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| ### get off g++/gcc 2.95
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| ### have some better mechanism for transitioning to future compiler versions
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| ## better documentation setup and documentation
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| ### for sw development
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| #### guidelines for quick prototyping
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| #### guidelines for interfaces for distributable algorithms (e.g., segmentation, ITK?)
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| #### goals for full applications that will be shared
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| ### for paper production
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| ### for running computational experiments (tool development, prototyping, testing)
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| ### for production-oriented data-driven work (tool production use, e.g., wrist data, brain data)
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| ### for hardware resources (wheatstone, cave, etc.)
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| == Cagatay ==
| | * Text Resolution Experiment |
| # Publish your first paper on topological analysis of dwi invariants.
| | ** Run within-subject experiment on 20 participants |
| ## See if David can help with any connections to speed up.
| | ** Submit to Vis'19 - End of March |
| # Refine the 10-problems and finalize thesis commitee candidates.
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| ## Constraints: important, high impact, fun, brain-diffusion, better use of powerful & core CS ideas, few-but-ripe.
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| ## Aim: conferences:: siggraph, vis, ismrm, cvpr, iccv, miccai. journals:: science, nature, tvcg, neuroimage, tmi.
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| ## Add dwi template matching using one-forms to the 10-problems.
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| # Wrap up the two manifold coloring papers
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| ## siggraph, vis.
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| # Publish the math notes on-line.
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| # Learn brain neuroanatomy.
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| == David ==
| | * IEEE VR |
| # cs137 runs smoothly, with good resulting projects and learning
| | ** Presentation in Osaka - End of March |
| # spring topics course syllabus and schedule complete (by 15 Jan)
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| # <s> deliver an inspiring Visualization capstone talk </s>
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| # improve group infrastructure: sw, data, dissemination, tools (with help from sw engineer, Sidra, and Wudan)
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| # more brain project deliverables
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| # Trey stuff happy
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| # support group members' goals and growth, particularly impact and products
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| # refine 5-year funding/sabbatical plan -- write some proposals
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| # <s> keep up on dept service </s>
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| # keep up on professional service
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| == David G ==
| | * VT Study resubmit |
| # Learn about the field of proteomics and the research being conducted by Prof. Salomon's group
| | ** find a venue that requires few changes to the manuscript |
| # Familiarize myself with the pathway exploration tool that has been developed by Radu Jianu
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| # Understand the data sets generated by Prof. Salomon's group and how they are incorporated into the pathway exploration tool
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| # Fully integrate the pathway exploration tool into the software infrastructure of Prof. Salomon's lab
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| # Test the integration of the pathway exploration tool by using it myself and teaching members of Prof. Salomon's lab to use it
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| # Work with lab members using the software to determine other improvements that can be made, and detail requirements to be implemented in the future
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| # Familiarize myself with the Human Protein Reference Database (HPRD)
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| # Choose a protein of interest and use the pathway exploration tool to understand the other proteins that are associated with it to test a specific hypothesis related to proteomics (to be conducted with member from Prof. Salomon's lab)
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| # Create an extended abstract by the end of the semester detailing my achievements/contributions and their relevance
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| == Eni ==
| | * DinoTracker |
| # i. work on the augmentation of the NeuroImage paper (write / learn LATEX / become comfortable with the experimental techniques / analyze the data / interpret the results / finish)
| | ** Add interactive UI |
| # ii. help prepare preliminary results for the collaboration with S. Correia et. al
| | ** Complete refactoring |
| # iii. improve computational linear algebra skills
| | ** Release as open-source |
| # iv. learn about visualization techniques
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| # v. improve programming skills
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| # vi. gain confidence as a researcher, while learning from the other people in the group & working independently
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| # vii. get an ISMRM'09 poster accepted as a talk
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| == Jadrian ==
| | * Thesis |
| # Papers: make progress on all, submit one or two to ISMRM (abstracts / posters due Nov. 12th)
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| ## Work on Jack Simon's longitudinal data, motivating
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| ### connective coherence maps
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| ### planar differential measures
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| ### learning statistics for data analysis
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| ## Write a numerical analysis paper on orientation-dependent tractwise scalar measures like parallel and perpendicular diffusivity
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| ## Develop a WM microstructure model; maybe look for a neuroanatomy collaborator?
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| ## Continue to support data processing for Ron Cohen's HIV study
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| # Keep CS137 running smoothly
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| # Resubmit comparison visualization paper to EuroVis (abstracts due Nov. 28)
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| # Continue cleaning up and generalizing the pipeline
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| ## put components in $G
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| ## master build scripts in a language that has conditionals (can Make do this?)
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| ## keep up to date with processing for all different data sources
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| # Document everything I come across in the wiki
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| dhl sez: get some paper drafts done now!
| | === [[User:Bruce Campbell|Bruce]] === |
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| == Jian ==
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| # Papers:
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| ## Finish the ISVC symposium panel presentation by Dec 3 2008
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| ## Help with flow study. Hope to get the paper out by Nov 2. (according to Andy F.)
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| ## <s>(DONE) Submit the massing study work to VR 3DUI symposium (abstract due on Oct 24, paper due on Oct 31</s>
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| ### <s>(DONE) Dr. Bowman needs the draft by Oct 10th.</s>
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| ## <s>(DONE) Finish the ISVC panel submission by Sep. 22.</s>
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| ## <s>(DONE) Finish the Display paper by Sep 19 and submit to CHI</s>
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| ## <s>(DONE) Finish the Bat paper and submit to SICB by Sep. 9.</s>
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| # Job
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| ## Finish faculty search dossier draft by September 22 (keep discussing this with Prof. David Laidlaw)
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| ### <s>Look for / create the list of job potentials (done the files. keep improving)</s>
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| ### <s>Ask for recommendation letters (done by Sep 29th)</s>
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| ### <s>Update my web page (done by Nov 8th) </s>
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| ### Start presentation slides
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| # Proposal / fellowship
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| ## Finish the NSF proposal by Dec. 1.
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| ### Start early to get the coPI informed! who are they?
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| ### Discuss main ideas
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| ## <s>(DONE) Submit L'Oreal fellowship by Oct 31</s>
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| # Community
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| ## <s>(DONE) 10 paper reviews by Nov 1st.</s>
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| # Not sure stuff:
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| ## Finish the book chapter about the VR for eduction abstract by Nov 15 2008 and chapter by March 15 2009 (if accepted)
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| ## Dr. Setareh's work
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| dhl sez: adjust for reality (eg devon paper), discuss things only when necessary, doing chapter?, CoPI question?
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| == Laura == | | === [[User: Fumeng Yang|Fumeng]] === |
| # Keep improving my ethic of work
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| # Get experience on running experiments with humans
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| # Improve my experimental design skills
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| # Develop my scientific writing skills
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| # Have a project finished that can be my master's thesis
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| # Try to get a paper that can hopefully be submitted
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| == Radu ==
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| # resubmit protein paper
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| # to Bioinformatics by Sept 30.
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| # to TVCG if answer not positive and response comes before Dec 1.
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| # develop and implement a paper for Vis2009
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| # write 1 page abstracts/proposals for ideas to evaluate them
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| # Phd topic
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| # write 2 page abstractrs/proposals for ideas and evaluate them (contain lit search)
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| # at least one proposal by the end of Oct. and one by the end of Nov.
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| # make progress in Benoist lab
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| # write the NIH report for Immgen as it should look at the end of the semester (by Sept 30)
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| # genome-viewer (deploy for use, display at Broad)
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| # have Leo and other people from the Lab use proteinApp; produce a document with their workflows and suggestions
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| # port genomic data into proteinApp
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| # create a project plan for cell lineage analysis
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| # monitor, help and guide David Ginsburg
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| dhl sez: responsiveness, deliverables
| | == Current Plans and Goals (Summer '19) == |
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| == Sidra == | | === [[User:David Laidlaw|David]] === |
| # visweb page per pub for images etc
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| == Trevor ==
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| # Finish TMI Paper.
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| #.Revise nerve orientation paper, submit to eurovis
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| ## Abstract Submission: Nov 28, 2008
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| ## Paper Submission: Dec 05, 2008
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| # Consider options for i3D submission.
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| # Apply for NSF Fellowship.
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| # Evaluate plans for the summer (if those plans might need to be acted on sooner rather than later).
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| # Research comps at the end of the semester?
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| # Get through my classes.
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| # Refine long-term project ideas.
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| # Try to protect my time more effectively.
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| == Wenjin == | | === [[User:Johannes Novotny|Johannes]] === |
| # pass research comps
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| # DONE: vis conference: poster and presentation
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| # Caltech macaque data working:
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| ## make sure tensor corrected
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| ## show tube
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| ## DONE: acquisition parameters verified with caltech
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| ## microscopic images of histological scans obtained
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| # ISMRM paper submission on diffusion model + microstructure parameters (axon radius, etc) measurement paper (11/12)
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| # Continue support Steve's and Ron's group (Anna, Win, etc) working with brainapp
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| == Wudan ==
| | * Text Resolution Experiment |
| # play with google analytics
| | ** Submit to TVCG |
| # ? successes wiki
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| # demo menu
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| = Past Plans and Goals = | | * VT Study resubmit |
| | ** find a venue that requires few changes to the manuscript |
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| | * DinoTracker |
| | ** Finish Release Version |
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| | * Thesis |
| | ** Complete by End of July |
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| | * Graduate |
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| | === [[User:Bruce Campbell|Bruce]] === |
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| | === [[User: Fumeng Yang|Fumeng]] === |
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| | <!-- please don't edit below this line --> |
| | |
| | ---- |
| | |
| | == Past Plans and Goals == |
| | * [[/Spring 2018|Spring '18]] |
| | * [[/Fall 2017|Fall '17]] |
| | * [[/Summer 2016|Summer '16]] |
| | * [[/Spring 2016|Spring '16]] |
| | * [[/Fall 2015|Fall '15]] |
| | * [[/Summer 2015|Summer '15]] |
| | * [[/Spring 2015|Spring '15]] |
| | * [[/Fall 2014|Fall '14]] |
| | * [[/Spring-Summer 2014|Spring-Summer '14]] |
| | * [[/Summer-Fall 2013|Summer-Fall '13]] |
| | * [[/Spring 2013|Spring '13]] |
| | * [[/Fall 2012|Fall '12]] |
| | * [[/Summer 2012|Summer '12]] |
| | * [[/Spring 2012|Spring '12]] |
| | * [[/Summer-Fall 2011|Summer-Fall '11]] |
| | * [[/Spring 2011|Spring '11]] |
| | * [[/Summer-Fall 2010|Summer-Fall '10]] |
| | * [[/Spring 2010|Spring '10]] |
| | * [[/Fall 2009|Fall '09]] |
| | * [[/Summer 2009|Summer '09]] |
| | * [[/Spring 2009|Spring '09]] |
| | * [[/Fall 2008|Fall '08]] |
| * [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer '08] | | * [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer '08] |
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| [[Category:VRL]] | | [[Category:VRL]] |