Plans and Goals/Spring 2011

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Plans and Goals Spring '11

Brad

Projects

  • Support the ongoing VRL Group projects:
    • Jadrian's brain research.
    • Radu's Protein project:
Assist Radu to integrate a test and any recent code.
  • Support collaborative projects.
    • Wrist cartilage support for Eni and Michael.
    • Migrate Win's mri pipeline to run in CIT.
    • Andy Loomis and Andy Forsberg's Adviser program.
  • Contribute to the design and development of the new cave. Integrate changes to vrg3d. Simplify the configuration and provide a quick start path for student projects.
  • Set up public distribution of diffusion imaging data.


Infrastructure

  • Manage the migration to the new file system.
  • Continue to write Wiki entries as needed.
  • Continue setting up third party software for students to use. Current imported packages are: blitz, cg, g3d, qt, camino, dtk, afni, nifti, vivro, vrpn, glut, and sdl.
  • Extend the build system to make kits for public source and binary distributions.
  • Improve support for remote development.
  • Launch the Windows test system.
  • Continue extend the make files to support new features such as additional third party packages.
  • Upgrade migrated Linux code to work with gcc 4.3 in conjunction with the summer Debian upgrade.
  • Continue to integrate any new tests written by students into nightly test runs.
  • Finish integrating the new version of the Nag libraries.


Knowledge

  • Learn more about the cave; particularly vrg3d software development.
  • Meet (SciVis talk) with students to address any integration issues.


Çağatay

  1. Give a good proposal talk.

Caroline

Research: Observe and analyze users for multi-view task modeling

  • Set up systems for interaction logging, video capturing, eye-tracking, etc.
  • Design a general data-gathering plan
  • Arrange observation sessions with the scientific labs
  • Analyze the data, do task sequence analysis
  • Aim for VisWeek publication of initial results

Identify long-term funding opportunities for modeling project

Help mentor students on usability design independent study

Service/community activities

  • Program committee for VisWeek
  • Contribute to VisWeek planning
  • General reviewing - EuroVis, PacificVis
  • Attend conferences - EuroVis, CHI?

David

  1. get diffusion normals, one library, and one executable distributed (late...)
  2. get one diffusion analysis completed and out (Paul? Cohen? hire?)
  3. visweek papers
    • Steve: comps (need title, brain diagrams and events expanded?)
    • Cagatay: coloring manifesto
    • Cagatay: metric learning via interaction (?)
    • Cagatay: cycles of brains (?)
    • Radu: Analysis nudges: guiding scientists towards improved analytic practices
    • Caroline: A Task Analysis of Reasoning with Multi-View Visualization (is vis appropriate?)
    • Ryan: get involved with Cagatay's? Cohen analysis (maybe not vis)?
    • Wenjin: too far from Vis?
    • Jadrian: modeling curve bundles? small problem results?
  4. support 7 phd students' progress toward graduation and careers
  5. new Cave creation on track
  6. more dissemination: talks/slides?, datasets (animals?)?, more/better images (>2004..., analytics)?
  7. funded grants happy: nih (ext?), immgen, nmrkrs, sa, aptima, jian
  8. si^2 and expedition proposal followthrough?
  9. teach a good CS16
  10. keep Vis '11 on track
  11. cs facilities vision document


Eni

  • Make progress in the surface analysis/congruency problem
  • Draft a proposal for my work
  • Read more literature that’s related to my work
  • Submit a paper to MRM on tracts


Jadrian

  1. Write up dissertation table of contents, outline, and some hole-filled chapters by July 31st
    • Done.
  2. Write up departmental proposal document by September 1st
    • Initial submission on September 10th.
  3. Present the proposal formally to the department in October
    • Proposal presentation on October 7th.
  4. Define a macrostructure model and cost function
    • The committee has been very involved in refining the idea of the "cost functions" for various fitting steps. The macrostructure model has gone through several revisions and is almost done.
  5. Implement curve clustering using the macrostructure model; write up for ISMRM
    • Not done. Intended ISMRM submission on Rician noise correction turned out not to be novel, though I did learn about a ton of related work that has been quite successful.
  6. Extend the macrostructure cost function to include DWI values
    • Not done.
  7. Implement macrostructure adjustment from DWIs; write up for an MRM paper
    • Not done.
  8. Get preliminary histological data of some kind, either by doing it in-house, working with collaborators, or outsourcing
    • Not done.
  9. Derive a minimal set of microstructure measurements from histological data
    • Not done.
  10. Copy South Africa data from DVDs and work with Amanda to import and process it
    • All data are organized on the data server but not processed.


Nathan

  • Diffusion pipeline work
    • Medical Image library
    • Possible further work, including:
      • Tubegen replacement
      • New (or updated) dfit utility
      • Others
  • Independent research
    1. Develop interesting research question
      • Related to my interests in human-computer interaction, behavioral economics/cognitive biases, etc.
    2. Come up with a project based on it
    3. Apply for UTRA for this project (deadline: February 9)
    4. Apply for NSF REU (Research Experience for Undergraduates) grant (deadline: February 15)
    5. Begin work on the project
  • Help with data processing for our collaborators
    • Including, possibly, new tools that may be required
  • (Ongoing) Provide support and documentation for previously-written tools


Radu

  1. Learning distance metrics from users (with Cagatay)
  2. Revise/submit neural maps paper
  3. Revise/resubmit google maps paper
  4. Run analysis nudges study and submit Vis paper
  5. Deploy at least one more Immgen map on the Immgen website
  6. Create the deployment infrastructure for the existing maps
  7. Make my PhD code reusable (installable, automatic testing, partially commented)

Wenjin

  • MICCAI paper submission? due 3/9/2011
  • NeuroImage journal submission
  • Get real brain data on double-PGSE acquisition (work with Ed)
  • good CONNECT meeting ( MRI of brain microstructure and connectivity) talk in Feb
  • Ponder on disease applications
  • Long-term research goals and plans: research plan, statement of interest, teaching statement, etc.

Steve

Comps progress

  • Finish development and study for history/modeling project + w/ brain diagram
  • Successful comps write-up (full draft by 2/7) and defense (must finish by 3/15)
  • (Info?)Vis submission from comps report
  • Check other venues that might be appropriate: e.g. ACM creativity & cognition, ...?

Brain Diagrams

  • Revise demo for Jeff (1/20) [complete]
  • Iterate with Schnitzer group over brain diagram ideas
  • Prepare vis poster
  • Write-up ideas for eye-tracking integration/experiments (mid Feb)

Misc

  • Finish final course req for candidacy
  • Complete NSF BEARCORE training (1/25) [complete]
  • Search fellowship opportunities, list (with deadlines) by 4/1
  • Poster sketch with braphael on explanatory path vis (after comps)
  • Whatever needed for grant that's funding me


Ryan

  • Complete programming comps successfully
  • Become familiar with group's DTI tools and projects
  • Follow up on David's vis conf suggestions
  • Expand paper with Shantanu to journal submission
  • Investigate research opportunities for surface based methods with DTI
  • Choose and propose research comps project
  • Coursework
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