Plans and Goals/Summer 2009

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Andy

  1. mri/wrist
    1. tools
      1. registration, classification, distance-field calculation, bone proximity calc.
      2. graphical visualization/verification?
    2. modeling?
  2. $G (nightly tests, architecture, outside test-case = ADVISER)
  3. future funding candidates
    1. volume data visualization/analysis
    2. flow visualization w/ leopold/GK
    3. other?

Brad

Projects

  • Support the wrist project including collaborators. Currently the pipeline is being set up for Eni.
  • Support the brain project including collaborators. The brainapp program is in use for a study.
  • Support collaborators for the Protein project. Work with Radu to integrate a test and any recent code. Provide features so that MS Studio will interoperate with $G.
  • Migrate Jian's projects before she leaves.


Infrastructure

  • Write Wiki entries for creating and building projects (partially done).
  • Identify external software for students to use. Currently students download software based on their immediate needs. By providing support for a small number of external packages it will make it possible to distribute their software faster and with less effort. Students will have better support when they use common external software packages.
  • Extend make files for local installs and kits for source and binary distributions.
  • Get migrated linux code to work with gcc 4.3.
  • Integrate any new tests written by students into nightly test runs.
  • When Nag is upgraded make corresponding program changes.
  • Help Wudan upgrade VisWeb.


Knowledge

  • Survey which external packages are in use so they can be supported.
  • Find out which students are not using $G and provide documents they need to get involved.

Çağatay

  1. Finalize the phd committee and distribute proposal by June 15.
  2. Incorporate feedback from the committee into the proposal by July15.
  3. Demonstrate the utility of Reeb graphs for dt invariants by June 24.
  4. Submit surface deformation to a journal by August 31.

David

  1. improve group infrastructure: sw, data, dissemination, tools (with help from bb, asf)
  2. wrist progress; dynamics; proposal submission?
  3. harvard stuff moving; read Janeway?
  4. four dissertation proposals in progress
  5. support PhD progress
  6. refine 5-year funding/sabbatical plan – outline some proposals
  7. minimize professional service
  8. successful Dagstuhl
  9. vis2011 sited, early committee defined

Eni

  • work some more on the metrics & submit a paper
  • work with Andy on cartilage growing & wrist simulation tools
  • think of a problem I might want to work on once I start grad school

Jadrian

  1. Assemble a thesis committee and submit my proposal to them by 2009-06-15
    • Assembled the committee; submitted the proposal one week late on 06-22
  2. Incorporate committee's comments into my proposal by 2009-07-15
    • Incomplete as of the end of the summer, though many comments from the committee came quite late
  3. Work with Win and dhl to figure out the b matrices for the new acquisition protocol
    • Determined, with Ed's assistance, that noise bias in the b=1000 case was our problem, not non-zero gradient in the b=0 case as we presumed
  4. Get Mark Bastin's scans processed by 2009-06-30
    • Finished about a month late
  5. Make a list of papers to spawn from aims A and B of the proposal
    • Incomplete but some indication of proposed papers is in the proposal itself; a formal list will be an important supplementary document
  6. Finish clustering code and implement a couple other curve similarity measures for comparison
    • No significant progress here, but dhl's recommendation is to avoid the potential "bottomless pit of rat-holes" inherent in clustering until a 1.0 version of the entire system is in place
  7. Find or build implementations of some more sophisticated tractography techniques
    • No progress
  8. Work with Steve's group to get a HARDI acquisition
    • Took preliminary scans to explore the acquisition parameter space; still need to analyze options
  9. Start working on aim I of the proposal (diffusion simulation in a detailed microstructure model)
    • Meeting with UCSD researchers indicates that much less novel development will be necessary; should be able to recycle a huge body of pre-existing good code

Jian

  1. Papers / work:
    1. Finish the camber measurement paper ( first draft of the results section - by May 28)
    2. Finish the presence paper (accepted, by May 30)
    3. Finish the book chapter (accepted, by May 30)
    4. Finish the visualization paper whatever the result will be (by July 31st)
    5. Finish the display paper and submit it to TVCG (July 31st)
    6. Prepare the VR paper with a student at TJU (due in September, lead)
    7. Work on the vision paper (with the student + faculty at TJU) (invited)
  2. Career development:
    1. write up career goals and learning goals for the next 90 days and the next five years.
    2. Direct one student to work on the architecture project (for the VR paper)
    3. Direct one student to work on 3D interaction (get him to USM)
    4. inform others I will be moving
    5. improve time management / learn roles faculty to play
    6. Plan ahead for the new post (campus visit, lab space, facilities, collaborators)
  3. Travels:
    1. (maybe) ISBI (http://www.biomedicalimaging.org)
    2. SIGGRAPH (August 3-6)
    3. Campus visit (the end of June or the beginning of July)
    4. Leave the last week in July
  4. Learning:
    1. Shape
    2. continue to learn visualization + hci issues
    3. X3D
  5. Code:
    1. Work with Brad to get the measurement code accessible / reusable by other people
    2. Work with Brad to get other code bases tested before I leave

Radu

  1. Proposal draft and committee by June 15
  2. Revise Draft by July 15
  3. Multiple views framework done by June 15
  4. Multiple views framework deployed for Immgen July 1
  5. Protein vis into multiple views framework by July 15
  6. Comparative analysis of clustering ready for evaluation by September 1
  7. Plan for proposal paper 6 (annex 1) by September 1
  8. Cogsci literature review done by September 1


Trevor

  1. Distortion correction paper.
    1. Finalize content and evaluation.
    2. Submit to TMI? Consider where this will have the most impact.
  2. Work toward Vis submission on interaction histories, collaborative scientific visualization.
    1. Explore possible applications.
    2. Develop evaluation criterion.
    3. Consider software model as a contribution.
  3. Research comps proposal. (Interaction histories?)
    1. Draft complete by mid-February. (by February I mean April)
    2. Practice talk at SciVis meeting February 24th.
  4. Evaluate eye-tracking systems available at Brown.
    1. Develop webcam-based eye-tracking?
  5. Continue to explore and evaluate intern opportunities.
  6. Get through classes.
    1. CS224, CS295-J, Reading and Research.
  7. Improve time management.
  8. Improve writing.
    1. Explore opportunities for short submissions.

Wenjin

Thesis Proposal

  • finalize committee member by 6/15
  • first draft sent to committee 6/15
  • Incorporate feedback from the committee into the proposal by 7/15

Project

  • modified model for unknown fiber orientation by 7/15
  • derive optimal acquisition parameters for animal data by 8/5
  • model tested on simulation data by 8/10
  • animal data ready by 8/15
  • model tested on animal data by 9/10
  • prepare for MRM/TMI journal submission
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