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| == Current Schedule == | | == Current Schedule == |
| Meetings are on Tuesdays. | | Meetings are on Wednesdays. The authoritative list is in dhl's calendar. |
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| * 1:50 - jadrian
| | == Current Plans and Goals (Spring '19) == |
| * 2:00 - wenjin
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| * 2:10 - eni
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| * 2:20 - jadrian
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| * 2:30 - bb
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| * 2:40 - dtr
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| * 2:50 - trevor
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| * 3:00 - cad
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| * 3:10 - steve
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| * 3:20 - radu
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| == Current Plans and Goals (Spring '10) == | | === [[User:David Laidlaw|David]] === |
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| === [[User:Brad Berg|Brad]] ===
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| Projects
| | === [[User:Johannes Novotny|Johannes]] === |
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| * Support the ongoing projects including collaborators. Active projects are wrist, brain, adviser, and protein. | | * Text Resolution Experiment |
| | ** Run within-subject experiment on 20 participants |
| | ** Submit to Vis'19 - End of March |
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| * Assist Radu to integrate a test and any recent code. | | * IEEE VR |
| | ** Presentation in Osaka - End of March |
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| * Contribute to the design and development of the new cave. This includes integrating g3d, vrpn and hosting vrg3d. Once the software is running simplify the configuration and provide a quick start path for student projects. | | * VT Study resubmit |
| | ** find a venue that requires few changes to the manuscript |
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| * Set up a distribution of diffusion imaging data. | | * DinoTracker |
| | ** Add interactive UI |
| | ** Complete refactoring |
| | ** Release as open-source |
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| Infrastructure
| | * Thesis |
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| * Continue to write Wiki entries as needed.
| | === [[User:Bruce Campbell|Bruce]] === |
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| * Continue setting up external software for students to use. Current imported packages are: blitz, cg, g3d, qt, camino, dtk, vrpn, glut, and sdl.
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| * Finish extending make files for local installs and kits for source and binary distributions.
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| * Continue to make improvements to the make files so they are easier to use.
| | === [[User: Fumeng Yang|Fumeng]] === |
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| * Upgrade migrated Linux code to work with gcc 4.3.
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| * Continue to integrate any new tests written by students into nightly test runs.
| | == Current Plans and Goals (Summer '19) == |
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| | === [[User:David Laidlaw|David]] === |
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| * Finish integrating the new version of the Nag libraries.
| | === [[User:Johannes Novotny|Johannes]] === |
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| | * Text Resolution Experiment |
| | ** Submit to TVCG |
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| Knowledge
| | * VT Study resubmit |
| | ** find a venue that requires few changes to the manuscript |
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| * Learn more about the cave; particularly vrg3d software development. | | * DinoTracker |
| | ** Finish Release Version |
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| * Meet (SciVis talk) with students to address any integration issues. | | * Thesis |
| | ** Complete by End of July |
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| * Learn how to manage a project using Source Forge. | | * Graduate |
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|
| ----
| | === [[User:Bruce Campbell|Bruce]] === |
| === David ===
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| #get diffusion normals, one library, and one executable distributed
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| #wrist proposal submission (check with Trey?)
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| #support 5 phd students' + trevor's progress
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| #write a plan for HCI modeling work
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| #minimize professional service
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| | |
| ----
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| === [[Jadrian]] ===
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| | |
| * [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf|Initial thesis proposal, submitted 2009-06-22]]
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| * [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Proposal second revision, prepared 2009-10-15]]
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| | |
| # Further refine the thesis proposal in response to new information
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| # Create a list of papers to spawn from the proposal
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| # Present the proposal formally to the department
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| # Implement a macrostructure model and derive it from diffusion data (by clustering or otherwise, with possible manual adjustment)
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| # Create a 3D surface rendering of a macrostructure model instance
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| # Continue working with Ed Walsh, et al. to settle on some HARDI parameters
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| # Take at least one HARDI scan, even if parameters have not been finalized
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| # Get preliminary histological data of some kind, either by doing it in-house, working with collaborators, or outsourcing
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| # Continue working with DifSim/MCell developers to get source access and a working install here
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| # Derive a minimal set of microstructure measurements from histological data
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| # Make a plan for a future summer industry or academic internship
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| # Make a plan for completing the outside minor requirements
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| | |
| <!--
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| # Incorporate committee's comments into my proposal by 2009-10-15
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| #* Revision complete 2009-10-15
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| # Make a list of papers to spawn from the proposal by 2009-10-15
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| #* {{red|Incomplete}}
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| # Decide with dhl on the role of animal models in the proposal
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| #* Histological "wetwork" will play an important role in the research; significant planning and collaboration-building took place this semester
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| # Finish clustering code sufficient for an initial version of the backsolving system
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| #* {{red|Incomplete}}
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| # Find or build implementations of a more sophisticated tractography technique (Q-ball or Gordon's multi-tensor)
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| #* DTK & Trackvis installed and working with current data as of 2009-11-04
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| # Work with Ed Walsh, dhl, and wzhou to settle on some HARDI parameters
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| #* {{red|Scan parameters have not been decided}} but ongoing work with Steve's group is teaching us all more about parameter tradeoffs
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| # Take one HARDI scan by 2009-11-24
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| #* {{red|No new scan was acquired this fall}}, pending a decision about scan parameters
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| # Get DifSim (the MCell-based UCSD diffusion simulator) installed and working here
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| #* {{red|Not installed}} due to ongoing license issues, but I'm in communication with the developers and confident that it'll work out
| |
| -->
| |
| | |
| ----
| |
| === Radu ===
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| #deploy my current work (as application or google maps) to: Christophe, Hardy, Art, and Neuroscience
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| #gather structured feedback from the above mentioned labs
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| #write "Related Work" section of dissertation and updated thesis proposal.
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| #submit to Vis:
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| #*one paper on large map-like visualizations to InfoVis (100% submission probability),
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| #*one on comparing clusterings to VAST (50% submission probability)
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| #*one on 2D brain visualizations with Cagatay to Vis (25%).
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| #finalize my course requirements
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| | |
| ----
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| | |
| === [[User:Steven Gomez|Steve]] ===
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| # Staying on track for candidacy
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| ## Complete programming comp (late January)
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| ## Complete research comp proposal and presentation to committee (mid April)
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| ## Do well in courses
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| # Research goals
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| ## Explore current research in HCI related to creativity, and user interaction modeling
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| ## Identify significant, well-scoped research project in this area for the research comp proposal
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| ## Develop research skills, including paper reading/analysis and learning to communicate effectively
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| # Other academic goals
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| ## Work on collaboration skills (finding and communicating with colleagues in or outside of CS)
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| ## Work on time management and project planning
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| ## Learn what working with DHL is like, his expectations, etc.
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| ## Plan for the summer
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| ----
| |
| | |
| === [[User:Trevor O'Brien|Trevor]] === | |
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| # I3D poster & demo
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| ## Revised abstract: January 29
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| ## Conference: February 19th (poster complete by February 17)
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| # Vis Papers - Iterate often
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| ## Abstract: March 21
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| ## Full paper: March 31
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| ### Gene visualization paper
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| ### Confocal microscopy paper
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| # Genome Research paper
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| # Grad TA for CS224
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| # Paper with Paul Kulesa
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| ## Define goals contributions from Vis perspective
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| # Look for themes between work with Paul, Trey, and maybe Ben
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| ## Coordinate spaces? (Tensor invariances?)
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| ## Morphometrics? (Non-dimensionalization)
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| ## Other feature detection?
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| # Organize code, papers, tools, other resources to be backed up, handed off
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|
| ----
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|
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| === Wenjin ===
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| # Submit to MICCAI (March 11th) + good collaboration with Matt
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| # Prepare histology data - do homework about the right path to choose, acquire, and prepare the tissue
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| # Derive and test optimal double-PGSE imaging on Brown 3T scanner
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| # Propose by 10/15
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| # Submit MRM/TMI journal paper
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| == Current Plans and Goals (Fall '09) == | | === [[User: Fumeng Yang|Fumeng]] === |
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| === Çağatay ===
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| # Incorporate feedback from the committee into the[[:Image:Çağatay's_thesis_ideas.pdf | proposal]]
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| # Start working realizing the finalized proposal.
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| # Submit the histogram embedding work to ISMRM.
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| # Submit the surface deformation work to SIGGRAPH.
| |
| ----
| |
|
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|
| === [[User:Andy Forsberg|Andy]] ===
| | <!-- please don't edit below this line --> |
| # mri/wrist
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| ## tools
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| ### registration, classification, distance-field calculation, bone proximity calc.
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| ### graphical visualization/verification?
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| ## modeling?
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| # $G (nightly tests, architecture, outside test-case = ADVISER)
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| # future funding candidates
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| ## volume data visualization/analysis
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| ## flow visualization w/ leopold/GK
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| ## other?
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|
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|
| ---- | | ---- |
|
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| === [[User:Brad Berg|Brad]] ===
| |
|
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|
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| Projects
| |
|
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| * Support the ongoing projects including collaborators. Active projects are wrist, brainapp, adviser, and protein.
| |
|
| |
| * Assist Radu to integrate a test and any recent code.
| |
|
| |
| * Contribute to the design of the new cave.
| |
|
| |
|
| |
| Infrastructure
| |
|
| |
| * Continue to write Wiki entries as needed.
| |
|
| |
| * Continue setting up external software for students to use. Current imported packages are: blitz, cg, g3d, qt, and xerces
| |
|
| |
| * Extend make files for local installs and kits for source and binary distributions.
| |
|
| |
| * Continue to make improvements to the make files so they are easier to use and to provide Windows support.
| |
|
| |
| * Upgrade migrated Linux code to work with gcc 4.3.
| |
|
| |
| * Continue to integrate any new tests written by students into nightly test runs.
| |
|
| |
| * Integrate the new version of the Nag libraries.
| |
|
| |
|
| |
| Knowledge
| |
|
| |
| * Learn more about the cave; particularly software development.
| |
|
| |
| * Meet (SciVis talk) with students to address any integration issues.
| |
|
| |
|
| |
| ----
| |
|
| |
| === Çağatay ===
| |
| # Incorporate feedback from the committee into the[[:Image:Çağatay's_thesis_ideas.pdf | proposal]]
| |
| # Start working realizing the finalized proposal.
| |
| # Submit the histogram embedding work to ISMRM.
| |
| # Submit the surface deformation work to SIGGRAPH.
| |
| ----
| |
|
| |
| === David ===
| |
| #figure out software and data dissemination and get implemented with bb's help [some progress, more next semester]
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| #wrist proposal submission [not sure where this went with Trey]
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| #harvard stuff moving; read Janeway? [good meeting in Boston]
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| #support 6 phd students' progress [all proposals done!]
| |
| #write a plan for HCI modeling work (draft by 10/23, rev by 11/20) [not enough structure]
| |
| #minimize professional service [less successful than hoped]
| |
| #vis2011 sited, early committee defined after Vis by 10/16 [contract signed, delaying committee]
| |
| ----
| |
|
| |
| === Eni ===
| |
|
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| *submit tract integrity vs. cognitive tests abstract and histograms abstract to ismrm
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| *possibly write a paper on the wrist comparison study (old/new subjects)
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| *while working on different wrist problems, think of a problem I might want to focus on
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| *do well in the courses I'm taking
| |
|
| |
| ----
| |
|
| |
| === [[User:Jadrian Miles|Jadrian]] ===
| |
| [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf|Initial thesis proposal, submitted 2009-06-22]]
| |
|
| |
| # Incorporate committee's comments into my proposal by 2009-10-15
| |
| #* Revision complete 2009-10-15
| |
| # Make a list of papers to spawn from the proposal by 2009-10-15
| |
| #* {{red|Incomplete}}
| |
| # Decide with dhl on the role of animal models in the proposal
| |
| #* Histological "wetwork" will play an important role in the research; significant planning and collaboration-building took place this semester
| |
| # Finish clustering code sufficient for an initial version of the backsolving system
| |
| #* {{red|Incomplete}}
| |
| # Find or build implementations of a more sophisticated tractography technique (Q-ball or Gordon's multi-tensor)
| |
| #* DTK & Trackvis installed and working with current data as of 2009-11-04
| |
| # Work with Ed Walsh, dhl, and wzhou to settle on some HARDI parameters
| |
| #* {{red|Scan parameters have not been decided}} but ongoing work with Steve's group is teaching us all more about parameter tradeoffs
| |
| # Take one HARDI scan by 2009-11-24
| |
| #* {{red|No new scan was acquired this fall}}, pending a decision about scan parameters
| |
| # Get DifSim (the MCell-based UCSD diffusion simulator) installed and working here
| |
| #* {{red|Not installed}} due to ongoing license issues, but I'm in communication with the developers and confident that it'll work out
| |
|
| |
| ----
| |
|
| |
| === Radu ===
| |
| # Deploy existing visualization tools by Oct 15 (in Labs and in CVS - Protein-version2, Clustering apps)
| |
| # Migrate BrainApp functionality to the new framework by Nov 1 (help from Cagatay and Eni)
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| # Test usefulness of the QT vis framework (on Cagatay); if useful deploy by Nov 1
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| # Advance Immgen
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| ## Write report for next year
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| ## Daphne-data vis prototype by Nov 1
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| ## Genome-google maps operation by Oct1
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| ## Broad display operational
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| ## Paper on analyzing and disseminating large visualizations?
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| # Gather vis tools usage data
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| # Proposal
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| ## Gather, read and summarize cogsci and linked visualization literature
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| # 2D interaction on stream-tubes study? Paper?
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| # Successful Vis talk
| |
| # Proposal is [http://cs.brown.edu/people/jr/proposal_jr.pdf here]
| |
|
| |
| ----
| |
|
| |
| === Trevor ===
| |
|
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| # Research comps!
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| # Review and address EuroVis reviews for cell paper.
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| ## Submit to PacVis?
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| # Research comps work --> i3d submission.
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| # Narrow long term focus.
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| # Foster collaborations:
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| ## Paul Kulesa
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| ## Trey Crisco
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| ## Sharon Swartz
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| # Finish course requirements.
| |
|
| |
| ----
| |
|
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| === Wenjin ===
| |
|
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| * Finalize [http://cs.brown.edu/~wzhou/proposal_wzhou.pdf Proposal]: incorporate feedback from committee in NIH format
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| * Survive NEUR 1650
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| * Analytical model tested on simulation data to accomplish 1-2 of the following (based on current limitations):
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| ** estimate axon parameter for unknown fiber direction
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| ** recover small axon radii < 4 micrometer
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| ** estimation with clinically achievable acquisitions
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| ** build and evaluate 4-compartment model with water exchange vs. 2-compartment
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| * Derive and test optimal imaging parameters on Brown 3T scanner
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| * submit to ISMRM (Nov. 10th) or MICCAI in March
| |
| * prepare for MRM/TMI journal submission
| |
|
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| === [[User:Steven Gomez|Steve]] ===
| |
|
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| Course work
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| * Explore courses that may be relevant to research interests, or may help me think more outside-the-box
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| * Use project classes to explore interests in graphics, vis, hci
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| Research
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| * Draft R&R plan for spring semester by 11/15
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| * Start thinking about research comp ideas and proposal by 11/15
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| * Contribute to the VRL however I can
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| * Search through past ideas/projects worth investigating more by 10/1
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| ** Online raytracing with voronoi diagrams?
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| ** Interfaces that learn?
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|
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| Personal
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| * Get adjusted to Brown, Providence, graduate school
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| ** Work on time management, organization
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| * Pass programming comp in January
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|
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| == Past Plans and Goals == | | == Past Plans and Goals == |
| | * [[/Spring 2018|Spring '18]] |
| | * [[/Fall 2017|Fall '17]] |
| | * [[/Summer 2016|Summer '16]] |
| | * [[/Spring 2016|Spring '16]] |
| | * [[/Fall 2015|Fall '15]] |
| | * [[/Summer 2015|Summer '15]] |
| | * [[/Spring 2015|Spring '15]] |
| | * [[/Fall 2014|Fall '14]] |
| | * [[/Spring-Summer 2014|Spring-Summer '14]] |
| | * [[/Summer-Fall 2013|Summer-Fall '13]] |
| | * [[/Spring 2013|Spring '13]] |
| | * [[/Fall 2012|Fall '12]] |
| | * [[/Summer 2012|Summer '12]] |
| | * [[/Spring 2012|Spring '12]] |
| | * [[/Summer-Fall 2011|Summer-Fall '11]] |
| | * [[/Spring 2011|Spring '11]] |
| | * [[/Summer-Fall 2010|Summer-Fall '10]] |
| | * [[/Spring 2010|Spring '10]] |
| | * [[/Fall 2009|Fall '09]] |
| * [[/Summer 2009|Summer '09]] | | * [[/Summer 2009|Summer '09]] |
| * [[/Spring 2009|Spring '09]] | | * [[/Spring 2009|Spring '09]] |