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| | On this page the members of the [[VRL]] record and refine their goals for the current semester. This is a living document in which [[dhl]] will provide feedback. See the bottom of the page for links to past plans & goals documents. |
| [[Category:VRL]] | |
| * Andy
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| Run flowviseval and complete IEEE Vis submission before Nov 1.
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| Co-author NIH grant on new biology research tools
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| [probably] Spend some time working with Huffman and Bradley and others planning improvements to $G | |
| Brain project
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| Work with David to identify candidates for new research projects
| | == Current Schedule == |
| | Meetings are on Wednesdays. The authoritative list is in dhl's calendar. |
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| | == Current Plans and Goals (Spring '19) == |
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| * Brad
| | === [[User:David Laidlaw|David]] === |
| make research group more productive -- products are
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| knowledge created
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| knowledge disseminated
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| publications published
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| publications downloaded and cited
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| code created to make publications
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| code used by close collaborators
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| code downloaded (perhaps by and used by outsiders
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| group overhead reduced
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| knowledge created, disseminated, made impactful
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| have work be focused on specific funded grants
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| work independently
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| provide sw engineering help and support to individuals in the group
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| A+: get wrist distance-map tools usable by Trey's group, Evan in particular
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| registration code broken (manifolds issue)
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| ligament length code broken (probably manifolds again)
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| get manifolds into the fold; work from Cindy's source control?
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| A: understand why Evan had to copy code rather that using our source within source control
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| A: help direct Sidra and Wudan to improve visweb
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| define some google analytics goals and track our performance on them (high time on page, low exit rate, visit download pages, visit other target pages)
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| update site to improve those metrics, e.g., images not getting well indexed by google because of link structure
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| review Daniel Acevedo's web e-mail feedback for ideas
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| focus on brain or wrist to preserve allocability, but make globally useful
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| better availability of talks and videos that we make
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| many ppt's already around -- could be videos with a narration
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| a number of full videos already around, some on web, but not easily found
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| streaming video server?
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| put things on utube or other distribution sites?
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| create a plan to make available brain diffusion imaging data (perhaps coupling to an existing NIH-funded site)
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| be general enough to also support wrist data, gene data, proteomics data, etc.
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| is there any kind of "push" technology for sending papers to lists or individuals (spam...)
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| A: shift to more principled software development
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| do so incrementally to preserve existing knowledge of users and existing code
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| bug tracking system?
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| determine some principles for sw
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| main shared $G is read only
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| explicit writable checkouts by default instead of implicit
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| all sw components have tests
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| nagging scripts
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| code checked out too long
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| missing tests
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| failing tests
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| regular tests of outside infrastructure (net flakiness, disks filling up, etc.)
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| address missing tests, etc
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| better solution for linux compiler versions
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| don't break windows and other platforms
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| get off g++/gcc 2.95
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| have some better mechanism for transitioning to future compiler versions
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| better documentation setup and documentation
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| for sw development
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| guidelines for quick prototyping
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| guidelines for interfaces for distributable algorithms (e.g., segmentation, ITK?)
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| goals for full applications that will be shared
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| for paper production
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| for running computational experiments (tool development, prototyping, testing)
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| for production-oriented data-driven work (tool production use, e.g., wrist data, brain data)
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| for hardware resources (wheatstone, cave, etc.)
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| * Cagatay
| | === [[User:Johannes Novotny|Johannes]] === |
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| Publish your first paper on topological analysis of dwi invariants.
| | * Text Resolution Experiment |
| See if David can help with any connections to speed up.
| | ** Run within-subject experiment on 20 participants |
| Refine the 10-problems and finalize thesis commitee candidates.
| | ** Submit to Vis'19 - End of March |
| Constraints: important, high impact, fun, brain-diffusion, better use of powerful & core CS ideas, few-but-ripe.
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| Aim: conferences:: siggraph, vis, ismrm, cvpr, iccv, miccai. journals:: science, nature, tvcg, neuroimage, tmi.
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| Wrap up the two manifold coloring papers
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| siggraph, vis.
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| Publish the math notes on-line.
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| Learn brain neuroanatomy.
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| | * IEEE VR |
| | ** Presentation in Osaka - End of March |
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| *David | | * VT Study resubmit |
| cs137 runs smoothly, with good resulting projects and learning
| | ** find a venue that requires few changes to the manuscript |
| spring topics course syllabus and schedule complete
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| deliver an inspiring Visualization capstone talk
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| improve group infrastructure: sw, data, dissemination, tools (with help from sw engineer, Sidra, and Wudan)
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| more brain project deliverables
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| Trey stuff happy
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| support group members' goals and growth, particularly impact and products
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| refine 5-year funding/sabbatical plan -- write some proposals
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| keep up on dept service
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| keep up on professional service
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| * David G | | * DinoTracker |
| Learn about the field of proteomics and the research being conducted by Prof. Salomon's group
| | ** Add interactive UI |
| Familiarize myself with the pathway exploration tool that has been developed by Radu Jianu
| | ** Complete refactoring |
| Understand the data sets generated by Prof. Salomon's group and how they are incorporated into the pathway exploration tool
| | ** Release as open-source |
| Fully integrate the pathway exploration tool into the software infrastructure of Prof. Salomon's lab
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| Test the integration of the pathway exploration tool by using it myself and teaching members of Prof. Salomon's lab to use it
| | * Thesis |
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| Work with lab members using the software to determine other improvements that can be made, and detail requirements to be implemented in the future
| | === [[User:Bruce Campbell|Bruce]] === |
| Familiarize myself with the Human Protein Reference Database (HPRD)
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| Choose a protein of interest and use the pathway exploration tool to understand the other proteins that are associated with it to test a specific hypothesis related to proteomics (to be conducted with member from Prof. Salomon's lab)
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| Create an extended abstract by the end of the semester detailing my achievements/contributions and their relevance
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| * Eni
| | === [[User: Fumeng Yang|Fumeng]] === |
| i. work on the augmentation of the NeuroImage paper
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| (write / learn LATEX / become comfortable with the experimental techniques / analyze the data / interpret the results / finish)
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| ii. help prepare preliminary results for the collaboration with S. Correia et. al
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| iii. improve computational linear algebra skills
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| iv. learn about visualization techniques
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| v. improve programming skills
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| vi. gain confidence as a researcher, while learning from the other people in the group & working independently
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| * Jadrian
| | == Current Plans and Goals (Summer '19) == |
| Papers: make progress on all, submit one or two to ISMRM (abstracts / posters due Nov. 12th)
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| Work on Jack Simon's longitudinal data, motivating
| | === [[User:David Laidlaw|David]] === |
| connective coherence maps
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| planar differential measures
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| learning statistics for data analysis
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| Write a numerical analysis paper on orientation-dependent tractwise scalar measures like parallel and perpendicular diffusivity
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| Develop a WM microstructure model; maybe look for a neuroanatomy collaborator?
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| Continue to support data processing for Ron Cohen's HIV study
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| Keep CS137 running smoothly
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| Resubmit comparison visualization paper to EuroVis (abstracts due Nov. 28)
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| Continue cleaning up and generalizing the pipeline
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| put components in $G
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| master build scripts in a language that has conditionals (can Make do this?)
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| keep up to date with processing for all different data sources
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| Document everything I come across in the wiki
| | === [[User:Johannes Novotny|Johannes]] === |
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| dhl sez: get some paper drafts done now!
| | * Text Resolution Experiment |
| | ** Submit to TVCG |
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| * Jian | | * VT Study resubmit |
| | ** find a venue that requires few changes to the manuscript |
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| Papers:
| | * DinoTracker |
| Submit the massing study work to VR 3DUI symposium (abstract due on Oct 24, paper due on Oct 31
| | ** Finish Release Version |
| Dr. Bowman needs the draft by Oct 10th.
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| Finish the ISVC symposium panel presentation by Dec 3 2008
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| Finish the I3D paper (or TVCG) by Oct 24. Extended from SICB work
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| Help with flow study. Hope to get the paper out by Nov 2. (according to Andy F.)
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| Job
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| Finish faculty search dossier draft by September 22 (keep discussing this with Prof. David Laidlaw)
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| Look for / create the list of job potentials (done the file. keep improving)
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| Ask for recommendation letters (done by Sep 29)
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| Update my web page
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| Start presentation slides
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| Proposal
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| Finish the NSF proposal by Nov.1 (or Dec? depending on the size of the proposal).
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| Start early to get the coPI informed! who are they?
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| Discuss main ideas
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| Waiting stage:
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| Devon's paper (finish it right away after getting feedback from Prof. Laidlaw, query Prof. Banks)
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| Supporting role
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| Continue to support vis group report, bat group, other vis groupers' work (hope to collaborate / guide students on some cog / interaction related work that I know well.)
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| Fulfill community service obligations (VR 2009 program committee, ISVC committee, and numerous review requests.
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| Done:
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| Finish the Display paper by Sep 19 and submit to CHI (done) | |
| Finish the Bat paper and submit to SICB by Sep 9 (done).
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| Finish the ISVC panel submission by Sep. 22 (done).
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| Not sure stuff:
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| Finish the book chapter about the VR for eduction abstract by Nov 15 2008 and chapter by March 15 2009 (if accepted)
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| Dr. Setareh's work
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| dhl sez: adjust for reality (eg devon paper), discuss things only when necessary, doing chapter?, CoPI question?
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| * Laura | | * Thesis |
| ⁃ Keep improving my ethic of work
| | ** Complete by End of July |
| ⁃ Get experience on running experiments with humans
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| ⁃ Improve my experimental design skills
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| ⁃ Develop my scientific writing skills
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| ⁃ Have a project finished that can be my master's thesis
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| ⁃ Try to get a paper that can hopefully be submitted
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| | * Graduate |
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| * Radu
| | === [[User:Bruce Campbell|Bruce]] === |
| - resubmit protein paper
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| - to Bioinformatics by Sept 30.
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| - to TVCG if answer not positive and response comes before Dec 1.
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| - develop and implement a paper for Vis2009
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| write 1 page abstracts/proposals for ideas to evaluate them
| | === [[User: Fumeng Yang|Fumeng]] === |
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| - Phd topic
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| - write 2 page abstractrs/proposals for ideas and evaluate them (contain lit search) | | <!-- please don't edit below this line --> |
| - at least one proposal by the end of Oct. and one by the end of Nov. | |
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| - make progress in Benoist lab
| | ---- |
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| - write the NIH report for Immgen as it should look at the end of the semester (by Sept 30) | | == Past Plans and Goals == |
| - genome-viewer (deploy for use, display at Broad) | | * [[/Spring 2018|Spring '18]] |
| - have Leo and other people from the Lab use proteinApp; produce a document with their workflows and suggestions | | * [[/Fall 2017|Fall '17]] |
| - port genomic data into proteinApp | | * [[/Summer 2016|Summer '16]] |
| - create a project plan for cell lineage analysis | | * [[/Spring 2016|Spring '16]] |
| | * [[/Fall 2015|Fall '15]] |
| | * [[/Summer 2015|Summer '15]] |
| | * [[/Spring 2015|Spring '15]] |
| | * [[/Fall 2014|Fall '14]] |
| | * [[/Spring-Summer 2014|Spring-Summer '14]] |
| | * [[/Summer-Fall 2013|Summer-Fall '13]] |
| | * [[/Spring 2013|Spring '13]] |
| | * [[/Fall 2012|Fall '12]] |
| | * [[/Summer 2012|Summer '12]] |
| | * [[/Spring 2012|Spring '12]] |
| | * [[/Summer-Fall 2011|Summer-Fall '11]] |
| | * [[/Spring 2011|Spring '11]] |
| | * [[/Summer-Fall 2010|Summer-Fall '10]] |
| | * [[/Spring 2010|Spring '10]] |
| | * [[/Fall 2009|Fall '09]] |
| | * [[/Summer 2009|Summer '09]] |
| | * [[/Spring 2009|Spring '09]] |
| | * [[/Fall 2008|Fall '08]] |
| | * [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer '08] |
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| - monitor, help and guide David Ginsburg
| | [[Category:VRL]] |
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| dhl sez: responsiveness, deliverables
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| * Sidra
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| visweb page per pub for images etc
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| * Trevor
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| 1. Finish TMI Paper.
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| 2. Revise nerve orientation paper, submit to eurovis. Abstract Submission: Nov 28, 2008
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| Paper Submission: Dec 05, 2008
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| 3. Consider options for i3D submission.
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| 4. Apply for NSF Fellowship.
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| 5. Evaluate plans for the summer (if those plans might need to be acted on sooner rather than later).
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| 6. Research comps at the end of the semester?
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| 7. Get through my classes.
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| 8. Refine long-term project ideas.
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| 9. Try to protect my time more effectively.
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| * Wenjin
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| pass research comps
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| vis conference: poster and presentation
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| Caltech macaque data working:
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| make sure tensor corrected
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| show tube
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| acquisition parameters verified with caltech
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| microscopic images of histological scans obtained
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| ISMRM paper submission on diffusion model + microstructure parameters (axon radius, etc) measurement paper (11/12)
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| Look into building vis posters into a Euro vis submission (11/28)
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| Continue support Steve's and Ron's group (Anna, Win, etc) working with brainapp
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| * Wudan
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| play with google analytics
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| ? successes wiki
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| demo menu
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