Diffusion MRI

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Neuroscience Collaborations

Project	Location	Collaborators	Dataset Date Received / Path	Status								Scanner		Format	# Scans	Resolution (voxels)	# DWIs	Voxel Size (mm)	Orientation
Project	Location	Collaborators	Dataset Date Received / Path	C	U	D	F	M	F	T	B	F	B	Format	# Scans	Resolution (voxels)	# DWIs	Voxel Size (mm)	Orientation
Cognitive Aging	St. Louis	Rob Paul (UMSL), Tom Conturo (WUSTL)	2008-07-20 `$G/data/diffusion/st_louis/cognitive_aging.2008.07.20`	Y	Y	Y	Y	N	N	N	N	?	?	Interfile	1	83x110x64	36	2.0x2.0x2.0	?
Fibers at Risk	Colorado	Jack Simon	?	Y	Y	N	N	N	N	N	N	1.5T	?	?	?	?	?	?	?
Fibers at Risk	Portland	Jack Simon (VA), Bill Rooney (OHSU AIRC)	?	N	N	N	N	N	N	N	N	7T	GE	?	?	?	?	?	?
HIV	Memorial Hospital	Steve Correia, Ron Cohen	?	Y	Y	Y	N	N	N	N	N	1.5T	?	DICOM	?	256x256x90	?	0.8477x0.8477x1.667	?
	Brown Life Sci		2007-11-30 `$G/data/diffusion/brown3t/302CK.2007.11.30`	Y	Y	Y	Y	Y	N	N	N	3T	?	?	1	?	?	?	?
	Brown Life Sci		2008-07-21 `$G/data/diffusion/brown3t/cohen_hiv_study.2008.07.21`	Y	Y	Y	Y	Y	Y	Y	Y	3T	?	NIfTI	10	128x128x70	74	1.76562x1.76562x1.8	?
Macaques	Caltech	Jason Kaufman	2008-05-21 `$G/data/diffusion/caltech/macaque.2008.05.21`	Y	Y	Y	Y	Y	Y	Y	Y	?	Bruker	DICOM?	1	98x110x130	36	0.6x0.6x0.6	?
SA HIV	Cape Town	Bruce Spottiswoode	2007.10.22 `$G/data/diffusion/south_africa/normal.2007.10.22`	Y	Y	Y	Y	Y	Y	Y	Y	?	?	DICOM Mosaic	1	127x128x70	40	1.71875x1.71875x1.7	?
			2008.05.09 `$G/data/diffusion/south_africa/normal.2008.05.06.average1` `$G/data/diffusion/south_africa/normal.2008.05.06.average2` `$G/data/diffusion/south_africa/hiv.2008.05.09`	Y	Y	Y	Y	N	N	N	N	?	?	DICOM Mosaic	3	127x127x75	66	1.71875x1.71875x1.7	?
			2008.07.24 `$G/data/diffusion/south_africa/hiv_positive_apathy_negative_15patients.2008.07.24`	Y	Y	Y	Y	N	N	N	N	?	?	?	15	?	?	?	?
Tumors	Edinburgh	Mark Bastin	2007-11-06 `$G/data/diffusion/edinburgh/tumor.2007.11.06`	Y	Y	Y	Y	N	N	N	N	?	?	?	1	?	?	?	?
Tumors	Edinburgh	Mark Bastin	2008-07-24 `$G/data/diffusion/edinburgh/tumor_pilot.2008.07.24`	Y	Y	Y	Y	N	N	N	N	?	?	?	3	?	?	?	?

Software

File Formats

Format	Extension
DICOM	`.ima`; `.dcm`
DICOM Mosaic	`.ima`; `.dcm`
Analyze	`.hdr` / `.img`
NIfTI	`.nii`; `.nii.gz`; `.hdr` / `.img`
Interfile	`.ifh` / `.img`
MRIimage	none

HOWTOs

Diagnose tensor orientation problems

Diffusion MRI

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Diffusion MRI

Neuroscience Collaborations

Software

File Formats

HOWTOs

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