Diffusion MRI: Difference between revisions

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Line 20: Line 20:
| St. Louis
| St. Louis
| Rob Paul ([[Wikipedia:UMSL|UMSL]]),<br/>Tom Conturo ([[Wikipedia:WUSTL|WUSTL]])
| Rob Paul ([[Wikipedia:UMSL|UMSL]]),<br/>Tom Conturo ([[Wikipedia:WUSTL|WUSTL]])
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2008-07-20
| header = 2008-07-20
| content = <code>$G/data/diffusion/st_louis/cognitive_aging.2008.07.20</code>
| content = <code>$G/data/diffusion/st_louis/cognitive_aging.2008.07.20</code>
}}
}}
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not processed
| header = '''Not processed'''
| content = Single dataset needs to be processed ASAP for social reasons
| content = Single dataset needs to be processed ASAP for social reasons
}}
}}
Line 39: Line 39:
| Jack Simon
| Jack Simon
| ??
| ??
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not downloaded
| header = '''Not downloaded'''
| content = Longitudinal data and old proof-of-concept data need to be loaded into <code>$G/data/diffusion</code>
| content = Longitudinal data and old proof-of-concept data need to be loaded into <code>$G/data/diffusion</code>
}}
}}
Line 53: Line 53:
| Jack Simon ([[wikipedia:VA Hospital|VA]]),<br/>Bill Rooney ([[wikipedia:OHSU|OHSU]] AIRC)
| Jack Simon ([[wikipedia:VA Hospital|VA]]),<br/>Bill Rooney ([[wikipedia:OHSU|OHSU]] AIRC)
| ??
| ??
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not collected
| header = '''Not collected'''
| content = Still waiting for the 7T protocol to finalize
| content = Still waiting for the 7T protocol to finalize
}}
}}
Line 68: Line 68:
| rowspan="3" | Steve Correia,<br/>Ron Cohen
| rowspan="3" | Steve Correia,<br/>Ron Cohen
| ??
| ??
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not downloaded
| header = '''Not downloaded'''
| content = All the old data need to be transferred from <code>/map/gfx0/common0/diffusion/Interface/data</code>, cleaned up, and upgraded to the current pipeline
| content = All the old data need to be transferred from <code>/map/gfx0/common0/diffusion/Interface/data</code>, cleaned up, and upgraded to the current pipeline
}}
}}
Line 80: Line 80:
|-
|-
| rowspan="2" | Brown Life Sci
| rowspan="2" | Brown Life Sci
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2007-11-30
| header = 2007-11-30
| content = <code>$G/data/diffusion/brown3t/302CK.2007.11.30</code>
| content = <code>$G/data/diffusion/brown3t/302CK.2007.11.30</code>
}}
}}
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not processed
| header = '''Not processed'''
| content = cad has converted to MRIimage but hasn't run the full pipeline
| content = cad has converted to MRIimage but hasn't run the full pipeline
}}
}}
Line 95: Line 95:
| ??
| ??
|-
|-
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2008-07-21
| header = 2008-07-21
| content = <code>$G/data/diffusion/brown3t/cohen_hiv_study.2008.07.21</code>
| content = <code>$G/data/diffusion/brown3t/cohen_hiv_study.2008.07.21</code>
}}
}}
| '''Processed'''
| Processed
| [[NIfTI]]
| [[NIfTI]]
| 10
| 10
Line 109: Line 109:
| Caltech
| Caltech
| Jason Kaufman
| Jason Kaufman
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal |ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2008-05-21
| header = 2008-05-21
| content = <code>$G/data/diffusion/caltech/macaque.2008.05.21</code>
| content = <code>$G/data/diffusion/caltech/macaque.2008.05.21</code>
}}
}}
| '''Processed'''
| Processed
| ?? Bruker
| ?? Bruker
| [[DICOM]]?
| [[DICOM]]?
Line 124: Line 124:
| rowspan="3" | Cape Town
| rowspan="3" | Cape Town
| rowspan="3" | Bruce Spottiswoode
| rowspan="3" | Bruce Spottiswoode
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2007.10.22
| header = 2007.10.22
| content = <code>$G/data/diffusion/south_africa/normal.2007.10.22</code>
| content = <code>$G/data/diffusion/south_africa/normal.2007.10.22</code>
}}
}}
| '''Processed'''
| Processed
| ??
| ??
| [[DICOM#Mosaic|DICOM Mosaic]]
| [[DICOM#Mosaic|DICOM Mosaic]]
Line 136: Line 136:
| ??
| ??
|-
|-
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2008.05.09
| header = 2008.05.09
| content = <code>$G/data/diffusion/south_africa/normal.2008.05.06.average1</code><br/><code>$G/data/diffusion/south_africa/normal.2008.05.06.average2</code><br/><code>$G/data/diffusion/south_africa/hiv.2008.05.09</code>
| content = <code>$G/data/diffusion/south_africa/normal.2008.05.06.average1</code><br/><code>$G/data/diffusion/south_africa/normal.2008.05.06.average2</code><br/><code>$G/data/diffusion/south_africa/hiv.2008.05.09</code>
}}
}}
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 24ex; | contentcss = font-size: 90%; width: 24ex;
| header = Not processed
| header = '''Not processed'''
| content = HIV is done but average1 and average2 seem not to have been processed yet
| content = HIV is done but average1 and average2 seem not to have been processed yet
}}
}}
Line 151: Line 151:
| ??
| ??
|-
|-
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 85ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 85ex;
| header = 2008.07.24
| header = 2008.07.24
| content = <code>$G/data/diffusion/south_africa/hiv_positive_apathy_negative_15patients.2008.07.24</code>
| content = <code>$G/data/diffusion/south_africa/hiv_positive_apathy_negative_15patients.2008.07.24</code>
Line 166: Line 166:
| rowspan="2" | Edinburgh
| rowspan="2" | Edinburgh
| rowspan="2" | Mark Bastin
| rowspan="2" | Mark Bastin
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2007-11-06
| header = 2007-11-06
| content = <code>$G/data/diffusion/edinburgh/tumor.2007.11.06</code>
| content = <code>$G/data/diffusion/edinburgh/tumor.2007.11.06</code>
Line 178: Line 178:
| ??
| ??
|-
|-
| {{hidden | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| {{hidden | fw1 = normal | ta1 = left | headercss = font-size: 100%; width: 18ex; | contentcss = font-size: 90%; width: 60ex;
| header = 2008-07-24
| header = 2008-07-24
| content = <code>$G/data/diffusion/edinburgh/tumor_pilot.2008.07.24</code>
| content = <code>$G/data/diffusion/edinburgh/tumor_pilot.2008.07.24</code>

Revision as of 21:24, 19 August 2008

Neuroscience Collaborations

Project Location Collaborators Dataset Date Received / Path Status Scanner Format # Scans Resolution (voxels) Voxel Size (mm) Orientation
Cognitive Aging St. Louis Rob Paul (UMSL),
Tom Conturo (WUSTL)
2008-07-20
Not processed
?? Interfile 1 83x110x64 x 36 DWIs 2.0x2.0x2.0 ??
Fibers at Risk Colorado Jack Simon ??
Not downloaded
1.5T ?? ?? ?? ?? ?? ??
Portland Jack Simon (VA),
Bill Rooney (OHSU AIRC) 		??
Not collected
7T GE ?? ?? ?? ?? ??
HIV Memorial Hospital Steve Correia,
Ron Cohen 		??
Not downloaded
1.5T ?? DICOM ?? 256x256x90 ? 0.8477x0.8477x1.667 ??
Brown Life Sci
2007-11-30
Not processed
3T ?? ?? 1 ?? ?? ??
2008-07-21
Processed NIfTI 10 128x128x70 x 74 DWIs 1.76562x1.76562x1.8 ??
Macaques Caltech Jason Kaufman
2008-05-21
Processed ?? Bruker DICOM? 1 98x110x130 x 36 DWIs 0.6x0.6x0.6 ??
SA HIV Cape Town Bruce Spottiswoode
2007.10.22
Processed ?? DICOM Mosaic 1 127x128x70 x 40 DWIs 1.71875x1.71875x1.7 ??
2008.05.09
Not processed
?? DICOM Mosaic 3 127x127x75 x 66 DWIs 1.71875x1.71875x1.7 ??
2008.07.24
Not processed ?? ?? 15 ?? ?? ??
Tumors Edinburgh Mark Bastin
2007-11-06
Not processed ?? ?? 1 ?? ?? ??
2008-07-24
Not processed ?? ?? 3 ?? ?? ??

Software

File Formats

Format Extension
DICOM .ima; .dcm
DICOM Mosaic .ima; .dcm
Analyze .hdr / .img
NIfTI .nii; .nii.gz; .hdr / .img
Interfile .ifh / .img
MRIimage none
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