3rd Party Diffusion MRI Software

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This page is a repository for information about programs that other people have written to process and visualize diffusion MRI data. By examining features of these other programs, we may get inspiration for improvements in our own work.

Name	Platform	Source?	Notes
3D Slicer	Lin, Win, Mac	Y
FSL	Lin, Win, Mac	Y	GUI, plus CLI for individual processing steps. Contains FLIRT, etc.
MedINRIA	Lin, Win, Mac	N
Camino	Java	Y	No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
DTI-Query	Lin, Win, Mac	Y
CINCH	Lin, Win, Mac	N
MRI Studio (formerly DTI Studio)	Win	N
Trackvis and Diffusion Toolkit	Lin, Win, Mac	N	Despite the name, Diffusion Toolkit is a GUI program, not a library.
Freesurfer	Lin, Mac	N	GUI, plus CLI for individual processing steps.
Brain Voyager	Lin, Win, Mac	N	Commercial license for all users.
SPM	Matlab	Y	Designed for data sequences, as found in fMRI studies.

3rd Party Diffusion MRI Software

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