Neuroimaging Systems

Tools

Volume Visualization

• FSLView
• MRIcron
• MedINRIA

Shape Visualization

• TrackVis
• ShapeViewer
• Paraview

Network Visualization

• Cytoscape
• Gephi
• ConnectomeViewer

Challenges

• Integration of volume, geometry, network, tabular data
• Query by subject, metadata, anatomy, or statistics
• Comparison across subject, modalities, metrics
• Coordinate systems, including rigid, affine, non-linear
• Memory problems

Projects and Institutes

• University of Utah Center for Neuroimage Analysis
• Human Connectome Project Harvard-UCLA-MGH
• Human Connectome WU-Minn
• Mouse Connectome
• LONI Image Database Archive (IDA)
• Parkinson's Progression Marker's Initiative (PPMI)
• International Consortium of Brain Mapping (ICBM}
• Alzheimer's Disease Neuroimaging Initiative (ADNI)
• Biomedical Informatics Research Network (BIRN)
• National Alliance for Medical Image Computing (NA-MIC)
• Open Source Informatics for Biomedical Imaging Research (XNAT)
• Central Neuroimaging Data Archive