Plans and Goals: Difference between revisions

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Fall 2008 Plans
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[[Category:VRL]]
[[Category:VRL]]
* Andy
* Andy
Run flowviseval and complete IEEE Vis submission before Nov 1.  
- Run flowviseval and complete IEEE Vis submission before Nov 1.  
Co-author NIH grant on new biology research tools  
- Co-author NIH grant on new biology research tools  
[probably] Spend some time working with Huffman and Bradley and others planning improvements to $G
- [probably] Spend some time working with Huffman and Bradley and others planning improvements to $G
Brain project
- Brain project
 
- Work with David to identify candidates for new research projects
Work with David to identify candidates for new research projects




* Brad
* Brad
make research group more productive -- products are
- make research group more productive -- products are
knowledge created
  * knowledge created
knowledge disseminated
  * knowledge disseminated
publications published
  * publications published
publications downloaded and cited
  * publications downloaded and cited
code created to make publications
  * code created to make publications
code used by close collaborators
  * code used by close collaborators
code downloaded (perhaps by and used by outsiders
  * code downloaded (perhaps by and used by outsiders
group overhead reduced
- group overhead reduced
knowledge created, disseminated, made impactful
- knowledge created, disseminated, made impactful
have work be focused on specific funded grants
- have work be focused on specific funded grants
work independently
- work independently
provide sw engineering help and support to individuals in the group
- provide sw engineering help and support to individuals in the group
A+: get wrist distance-map tools usable by Trey's group, Evan in particular
- A+: get wrist distance-map tools usable by Trey's group, Evan in particular
registration code broken (manifolds issue)
  * registration code broken (manifolds issue)
ligament length code broken (probably manifolds again)
  * ligament length code broken (probably manifolds again)
get manifolds into the fold; work from Cindy's source control?
  * get manifolds into the fold; work from Cindy's source control?
A: understand why Evan had to copy code rather that using our source within source control
- A: understand why Evan had to copy code rather that using our source within source control
A: help direct Sidra and Wudan to improve visweb  
- A: help direct Sidra and Wudan to improve visweb  
define some google analytics goals and track our performance on them (high time on page, low exit rate, visit download pages, visit other target pages)
- define some google analytics goals and track our performance on them (high time on page, low exit rate, visit download pages, visit other target pages)
update site to improve those metrics, e.g., images not getting well indexed by google because of link structure
- update site to improve those metrics, e.g., images not getting well indexed by google because of link structure
review Daniel Acevedo's web e-mail feedback for ideas
- review Daniel Acevedo's web e-mail feedback for ideas
focus on brain or wrist to preserve allocability, but make globally useful
- focus on brain or wrist to preserve allocability, but make globally useful
better availability of talks and videos that we make
- better availability of talks and videos that we make
many ppt's already around -- could be videos with a narration
- many ppt's already around -- could be videos with a narration
a number of full videos already around, some on web, but not easily found
- a number of full videos already around, some on web, but not easily found
streaming video server?
- streaming video server?
put things on utube or other distribution sites?
- put things on utube or other distribution sites?
create a plan to make available brain diffusion imaging data (perhaps coupling to an existing NIH-funded site)
- create a plan to make available brain diffusion imaging data (perhaps coupling to an existing NIH-funded site)
be general enough to also support wrist data, gene data, proteomics data, etc.
- be general enough to also support wrist data, gene data, proteomics data, etc.
is there any kind of "push" technology for sending papers to lists or individuals (spam...)
- is there any kind of "push" technology for sending papers to lists or individuals (spam...)
A: shift to more principled software development
- A: shift to more principled software development
do so incrementally to preserve existing knowledge of users and existing code
- do so incrementally to preserve existing knowledge of users and existing code
bug tracking system?
- bug tracking system?
determine some principles for sw
- determine some principles for sw
main shared $G is read only
- main shared $G is read only
explicit writable checkouts by default instead of implicit
- explicit writable checkouts by default instead of implicit
all sw components have tests
- all sw components have tests
nagging scripts
- nagging scripts
code checked out too long
- code checked out too long
missing tests
- missing tests
failing tests
- failing tests
regular tests of outside infrastructure (net flakiness, disks filling up, etc.)
- regular tests of outside infrastructure (net flakiness, disks filling up, etc.)
address missing tests, etc
- address missing tests, etc
better solution for linux compiler versions
- better solution for linux compiler versions
don't break windows and other platforms
- don't break windows and other platforms
get off g++/gcc 2.95
- get off g++/gcc 2.95
have some better mechanism for transitioning to future compiler versions
- have some better mechanism for transitioning to future compiler versions
better documentation setup and documentation
- better documentation setup and documentation for sw development
for sw development
- guidelines for quick prototyping
guidelines for quick prototyping
- guidelines for interfaces for distributable algorithms (e.g., segmentation, ITK?)
guidelines for interfaces for distributable algorithms (e.g., segmentation, ITK?)
- goals for full applications that will be shared
goals for full applications that will be shared
  * for paper production
for paper production
  * for running computational experiments (tool development, prototyping, testing)
for running computational experiments (tool development, prototyping, testing)
  * for production-oriented data-driven work (tool production use, e.g., wrist data, brain data)
for production-oriented data-driven work (tool production use, e.g., wrist data, brain data)
  * for hardware resources (wheatstone, cave, etc.)
for hardware resources (wheatstone, cave, etc.)




* Cagatay
* Cagatay


Publish your first paper on topological analysis of dwi invariants.  
- Publish your first paper on topological analysis of dwi invariants.  
See if David can help with any connections to speed up.  
- See if David can help with any connections to speed up.  
Refine the 10-problems and finalize thesis commitee candidates.  
- Refine the 10-problems and finalize thesis commitee candidates.  
Constraints: important, high impact, fun, brain-diffusion, better use of powerful & core CS ideas, few-but-ripe.  
- Constraints: important, high impact, fun, brain-diffusion, better use of powerful & core CS ideas, few-but-ripe.  
Aim: conferences:: siggraph, vis, ismrm, cvpr, iccv, miccai.  journals:: science, nature, tvcg, neuroimage, tmi.
- Aim: conferences:: siggraph, vis, ismrm, cvpr, iccv, miccai.  journals:: science, nature, tvcg, neuroimage, tmi.
Wrap up the two manifold coloring papers  
- Wrap up the two manifold coloring papers  
siggraph, vis.
- siggraph, vis.
Publish the math notes on-line.  
- Publish the math notes on-line.  
Learn brain neuroanatomy.
- Learn brain neuroanatomy.




*David
*David
cs137 runs smoothly, with good resulting projects and learning  
- cs137 runs smoothly, with good resulting projects and learning  
spring topics course syllabus and schedule complete  
- spring topics course syllabus and schedule complete  
deliver an inspiring Visualization capstone talk  
- deliver an inspiring Visualization capstone talk  
improve group infrastructure: sw, data, dissemination, tools (with help from sw engineer, Sidra, and Wudan)  
- improve group infrastructure: sw, data, dissemination, tools (with help from sw engineer, Sidra, and Wudan)  
more brain project deliverables  
- more brain project deliverables  
Trey stuff happy  
- Trey stuff happy  
support group members' goals and growth, particularly impact and products  
- support group members' goals and growth, particularly impact and products  
refine 5-year funding/sabbatical plan -- write some proposals  
- refine 5-year funding/sabbatical plan -- write some proposals  
keep up on dept service  
- keep up on dept service  
keep up on professional service
- keep up on professional service


* David G
* David G
Learn about the field of proteomics and the research being conducted by Prof. Salomon's group  
- Learn about the field of proteomics and the research being conducted by Prof. Salomon's group  
Familiarize myself with the pathway exploration tool that has been developed by Radu Jianu  
- Familiarize myself with the pathway exploration tool that has been developed by Radu Jianu  
Understand the data sets generated by Prof. Salomon's group and how they are incorporated into the pathway exploration tool  
- Understand the data sets generated by Prof. Salomon's group and how they are incorporated into the pathway exploration tool  
Fully integrate the pathway exploration tool into the software infrastructure of Prof. Salomon's lab
- Fully integrate the pathway exploration tool into the software infrastructure of Prof. Salomon's lab


Test the integration of the pathway exploration tool by using it myself and teaching members of Prof. Salomon's lab to use it
- Test the integration of the pathway exploration tool by using it myself and teaching members of Prof. Salomon's lab to use it


Work with lab members using the software to determine other improvements that can be made, and detail requirements to be implemented in the future  
- Work with lab members using the software to determine other improvements that can be made, and detail requirements to be implemented in the future  
Familiarize myself with the Human Protein Reference Database (HPRD)  
- Familiarize myself with the Human Protein Reference Database (HPRD)  
Choose a protein of interest and use the pathway exploration tool to understand the other proteins that are associated with it to test a specific hypothesis related to proteomics (to be conducted with member from Prof. Salomon's lab)
- Choose a protein of interest and use the pathway exploration tool to understand the other proteins that are associated with it to test a specific hypothesis related to proteomics (to be conducted with member from Prof. Salomon's lab)
 
- Create an extended abstract by the end of the semester detailing my achievements/contributions and their relevance
Create an extended abstract by the end of the semester detailing my achievements/contributions and their relevance




* Eni  
* Eni  
i.    work on the augmentation of the NeuroImage paper
- i.    work on the augmentation of the NeuroImage paper (write / learn LATEX / become comfortable with the experimental techniques / analyze the data / interpret the results / finish)  
      (write / learn LATEX / become comfortable with the experimental techniques / analyze the data / interpret the results / finish)  
- ii. help prepare preliminary results for the collaboration with S. Correia et. al  
ii. help prepare preliminary results for the collaboration with S. Correia et. al  
- iii. improve computational linear algebra skills  
iii. improve computational linear algebra skills  
- iv. learn about visualization techniques  
iv. learn about visualization techniques  
- v. improve programming skills
v. improve programming skills
- vi. gain confidence as a researcher, while learning from the other people in the group & working independently  
vi. gain confidence as a researcher, while learning from the other people in the group & working independently  




* Jadrian
* Jadrian
Papers: make progress on all, submit one or two to ISMRM (abstracts / posters due Nov. 12th)
- Papers: make progress on all, submit one or two to ISMRM (abstracts / posters due Nov. 12th)
 
- Work on Jack Simon's longitudinal data, motivating  
Work on Jack Simon's longitudinal data, motivating  
- connective coherence maps  
connective coherence maps  
- planar differential measures  
planar differential measures  
- learning statistics for data analysis
learning statistics for data analysis
- Write a numerical analysis paper on orientation-dependent tractwise scalar measures like parallel and perpendicular diffusivity
Write a numerical analysis paper on orientation-dependent tractwise scalar measures like parallel and perpendicular diffusivity
- Develop a WM microstructure model; maybe look for a neuroanatomy collaborator?  
 
- Continue to support data processing for Ron Cohen's HIV study
Develop a WM microstructure model; maybe look for a neuroanatomy collaborator?  
- Keep CS137 running smoothly  
Continue to support data processing for Ron Cohen's HIV study
- Resubmit comparison visualization paper to EuroVis (abstracts due Nov. 28)  
Keep CS137 running smoothly  
- Continue cleaning up and generalizing the pipeline  
Resubmit comparison visualization paper to EuroVis (abstracts due Nov. 28)  
- put components in $G  
Continue cleaning up and generalizing the pipeline  
- master build scripts in a language that has conditionals (can Make do this?)  
put components in $G  
- keep up to date with processing for all different data sources
master build scripts in a language that has conditionals (can Make do this?)  
- Document everything I come across in the wiki
keep up to date with processing for all different data sources
- dhl sez: get some paper drafts done now!
 
Document everything I come across in the wiki
 
dhl sez: get some paper drafts done now!


* Jian
* Jian
 
- Papers:
Papers:
  * Submit the massing study work to VR 3DUI symposium (abstract due on Oct 24, paper due on Oct 31
Submit the massing study work to VR 3DUI symposium (abstract due on Oct 24, paper due on Oct 31
  * Dr. Bowman needs the draft by Oct 10th.
Dr. Bowman needs the draft by Oct 10th.
  * Finish the ISVC symposium panel presentation by Dec 3 2008
Finish the ISVC symposium panel presentation by Dec 3 2008
  * Finish the I3D paper (or TVCG) by Oct 24. Extended from SICB work
Finish the I3D paper (or TVCG) by Oct 24. Extended from SICB work
  * Help with flow study. Hope to get the paper out by Nov 2. (according to Andy F.)
Help with flow study. Hope to get the paper out by Nov 2. (according to Andy F.)
- Job
Job
  * Finish faculty search dossier draft by September 22 (keep discussing this with Prof. David Laidlaw)
Finish faculty search dossier draft by September 22 (keep discussing this with Prof. David Laidlaw)
  * Look for / create the list of job potentials (done the file. keep improving)
Look for / create the list of job potentials (done the file. keep improving)
  * Ask for recommendation letters (done by Sep 29)
Ask for recommendation letters (done by Sep 29)
  * Update my web page
Update my web page
  * Start presentation slides
Start presentation slides
  * Proposal  
Proposal  
  * Finish the NSF proposal by Nov.1 (or Dec? depending on the size of the proposal).
Finish the NSF proposal by Nov.1 (or Dec? depending on the size of the proposal).
  * Start early to get the coPI informed! who are they?
Start early to get the coPI informed! who are they?
  * Discuss main ideas
Discuss main ideas
- Waiting stage:
Waiting stage:
  * Devon's paper (finish it right away after getting feedback from Prof. Laidlaw, query Prof. Banks)
Devon's paper (finish it right away after getting feedback from Prof. Laidlaw, query Prof. Banks)
- Supporting role
Supporting role
  * Continue to support vis group report, bat group, other vis groupers' work (hope to collaborate / guide students on some cog / interaction related work that I know well.)
Continue to support vis group report, bat group, other vis groupers' work (hope to collaborate / guide students on some cog / interaction related work that I know well.)
  * Fulfill community service obligations (VR 2009 program committee, ISVC committee, and numerous review requests.
Fulfill community service obligations (VR 2009 program committee, ISVC committee, and numerous review requests.
- Done:
Done:
  * Finish the Display paper by Sep 19 and submit to CHI (done)
Finish the Display paper by Sep 19 and submit to CHI (done)
  * Finish the Bat paper and submit to SICB by Sep 9 (done).   
Finish the Bat paper and submit to SICB by Sep 9 (done).   
  * Finish the ISVC panel submission by Sep. 22 (done).
Finish the ISVC panel submission by Sep. 22 (done).
- Not sure stuff:
Not sure stuff:
  * Finish the book chapter about the VR for eduction abstract by Nov 15 2008 and chapter by March 15 2009 (if accepted)
Finish the book chapter about the VR for eduction abstract by Nov 15 2008 and chapter by March 15 2009 (if accepted)
- Dr. Setareh's work
Dr. Setareh's work
- dhl sez: adjust for reality (eg devon paper), discuss things only when necessary, doing chapter?, CoPI question?
dhl sez: adjust for reality (eg devon paper), discuss things only when necessary, doing chapter?, CoPI question?


* Laura
* Laura
Line 181: Line 172:
     ⁃    Have a project finished that can be my master's thesis
     ⁃    Have a project finished that can be my master's thesis
     ⁃    Try to get a paper that can hopefully be submitted
     ⁃    Try to get a paper that can hopefully be submitted


* Radu
* Radu
  - resubmit protein paper
- resubmit protein paper
 
- to Bioinformatics by Sept 30.  
- to Bioinformatics by Sept 30.  
- to TVCG if answer not positive and response comes before Dec 1.
- to TVCG if answer not positive and response comes before Dec 1.
- develop and implement a paper for Vis2009
 
  - write 1 page abstracts/proposals for ideas to evaluate them
  - develop and implement a paper for Vis2009
- Phd topic
 
- write 2 page abstractrs/proposals for ideas and evaluate them (contain lit search)
  write 1 page abstracts/proposals for ideas to evaluate them
- at least one proposal by the end of Oct. and one by the end of Nov.
 
  - Phd topic
 
- write 2 page abstractrs/proposals for ideas and evaluate them (contain lit search)
- at least one proposal by the end of Oct. and one by the end of Nov.
 
  - make progress in Benoist lab
  - make progress in Benoist lab
 
- write the NIH report  for Immgen as it should look at the end of the semester (by Sept 30)
- write the NIH report  for Immgen as it should look at the end of the semester (by Sept 30)
- genome-viewer (deploy for use, display at Broad)
- genome-viewer (deploy for use, display at Broad)
- have Leo and other people from the Lab use proteinApp; produce a document with their workflows and suggestions
- have Leo and other people from the Lab use proteinApp; produce a document with their workflows and suggestions
- port genomic data into proteinApp
- port genomic data into proteinApp
- create a project plan for cell lineage analysis
- create a project plan for cell lineage analysis
- monitor, help and guide David Ginsburg
 
- dhl sez: responsiveness, deliverables
- monitor, help and guide David Ginsburg
 
 
dhl sez: responsiveness, deliverables
 


* Sidra
* Sidra
visweb page per pub for images etc
- visweb page per pub for images etc


* Trevor
* Trevor
    1.  Finish TMI Paper.
  -  1.  Finish TMI Paper.
    2.  Revise nerve orientation paper, submit to eurovis.                  Abstract Submission: Nov 28, 2008  
  -  2.  Revise nerve orientation paper, submit to eurovis.                  Abstract Submission: Nov 28, 2008  
                 Paper Submission: Dec 05, 2008  
                 Paper Submission: Dec 05, 2008  
    3.  Consider options for i3D submission.
  -  3.  Consider options for i3D submission.
    4.  Apply for NSF Fellowship.
  -  4.  Apply for NSF Fellowship.
    5.  Evaluate plans for the summer (if those plans might need to be acted on sooner rather than later).
  -  5.  Evaluate plans for the summer (if those plans might need to be acted on sooner rather than later).
    6.  Research comps at the end of the semester?
  -  6.  Research comps at the end of the semester?
    7.  Get through my classes.
  -  7.  Get through my classes.
    8.  Refine long-term project ideas.
  -  8.  Refine long-term project ideas.
    9.  Try to protect my time more effectively.
  -  9.  Try to protect my time more effectively.
 


* Wenjin
* Wenjin
 
- pass research comps  
pass research comps  
- vis conference: poster and presentation  
vis conference: poster and presentation  
- Caltech macaque data working:
Caltech macaque data working:
- make sure tensor corrected
make sure tensor corrected
- show tube
show tube
  - acquisition parameters verified with caltech
  acquisition parameters verified with caltech
  - microscopic images of histological scans obtained
  microscopic images of histological scans obtained
- ISMRM paper submission on diffusion model + microstructure parameters (axon radius, etc) measurement paper (11/12)  
ISMRM paper submission on diffusion model + microstructure parameters (axon radius, etc) measurement paper (11/12)  
- Look into building vis posters into a Euro vis submission (11/28)
Look into building vis posters into a Euro vis submission (11/28)
- Continue support Steve's and Ron's group (Anna, Win, etc) working with brainapp
Continue support Steve's and Ron's group (Anna, Win, etc) working with brainapp




* Wudan
* Wudan
  play with google analytics
  - play with google analytics
? successes wiki
- ? successes wiki
demo menu
- demo menu

Revision as of 16:57, 3 October 2008

  • Andy
- Run flowviseval and complete IEEE Vis submission before Nov 1. 
- Co-author NIH grant on new biology research tools 
- [probably] Spend some time working with Huffman and Bradley and others planning improvements to $G
- Brain project
- Work with David to identify candidates for new research projects


  • Brad
- make research group more productive -- products are
  * knowledge created
  * knowledge disseminated
  * publications published
  * publications downloaded and cited
  * code created to make publications
  * code used by close collaborators
  * code downloaded (perhaps by and used by outsiders
- group overhead reduced
- knowledge created, disseminated, made impactful
- have work be focused on specific funded grants
- work independently
- provide sw engineering help and support to individuals in the group
- A+: get wrist distance-map tools usable by Trey's group, Evan in particular
  * registration code broken (manifolds issue)
  * ligament length code broken (probably manifolds again)
  * get manifolds into the fold; work from Cindy's source control?
- A: understand why Evan had to copy code rather that using our source within source control
- A: help direct Sidra and Wudan to improve visweb 
- define some google analytics goals and track our performance on them (high time on page, low exit rate, visit download pages, visit other target pages)
- update site to improve those metrics, e.g., images not getting well indexed by google because of link structure
- review Daniel Acevedo's web e-mail feedback for ideas
- focus on brain or wrist to preserve allocability, but make globally useful
- better availability of talks and videos that we make
- many ppt's already around -- could be videos with a narration
- a number of full videos already around, some on web, but not easily found
- streaming video server?
- put things on utube or other distribution sites?
- create a plan to make available brain diffusion imaging data (perhaps coupling to an existing NIH-funded site)
- be general enough to also support wrist data, gene data, proteomics data, etc.
- is there any kind of "push" technology for sending papers to lists or individuals (spam...)
- A: shift to more principled software development
- do so incrementally to preserve existing knowledge of users and existing code
- bug tracking system?
- determine some principles for sw
- main shared $G is read only
- explicit writable checkouts by default instead of implicit
- all sw components have tests
- nagging scripts
- code checked out too long
- missing tests
- failing tests
- regular tests of outside infrastructure (net flakiness, disks filling up, etc.)
- address missing tests, etc
- better solution for linux compiler versions
- don't break windows and other platforms
- get off g++/gcc 2.95
- have some better mechanism for transitioning to future compiler versions
- better documentation setup and documentation for sw development
- guidelines for quick prototyping
- guidelines for interfaces for distributable algorithms (e.g., segmentation, ITK?)
- goals for full applications that will be shared
  * for paper production
  * for running computational experiments (tool development, prototyping, testing)
  * for production-oriented data-driven work (tool production use, e.g., wrist data, brain data)
  * for hardware resources (wheatstone, cave, etc.)


  • Cagatay
- Publish your first paper on topological analysis of dwi invariants. 
- See if David can help with any connections to speed up. 
- Refine the 10-problems and finalize thesis commitee candidates. 
- Constraints: important, high impact, fun, brain-diffusion, better use of powerful & core CS ideas, few-but-ripe. 
- Aim: conferences:: siggraph, vis, ismrm, cvpr, iccv, miccai.  journals:: science, nature, tvcg, neuroimage, tmi.
- Wrap up the two manifold coloring papers 
- siggraph, vis.
- Publish the math notes on-line. 
- Learn brain neuroanatomy.


  • David
- cs137 runs smoothly, with good resulting projects and learning 
- spring topics course syllabus and schedule complete 
- deliver an inspiring Visualization capstone talk 
- improve group infrastructure: sw, data, dissemination, tools (with help from sw engineer, Sidra, and Wudan) 
- more brain project deliverables 
- Trey stuff happy 
- support group members' goals and growth, particularly impact and products 
- refine 5-year funding/sabbatical plan -- write some proposals 
- keep up on dept service 
- keep up on professional service
  • David G
- Learn about the field of proteomics and the research being conducted by Prof. Salomon's group 
- Familiarize myself with the pathway exploration tool that has been developed by Radu Jianu 
- Understand the data sets generated by Prof. Salomon's group and how they are incorporated into the pathway exploration tool 
- Fully integrate the pathway exploration tool into the software infrastructure of Prof. Salomon's lab
- Test the integration of the pathway exploration tool by using it myself and teaching members of Prof. Salomon's lab to use it
- Work with lab members using the software to determine other improvements that can be made, and detail requirements to be implemented in the future 
- Familiarize myself with the Human Protein Reference Database (HPRD) 
- Choose a protein of interest and use the pathway exploration tool to understand the other proteins that are associated with it to test a specific hypothesis related to proteomics (to be conducted with member from Prof. Salomon's lab)
- Create an extended abstract by the end of the semester detailing my achievements/contributions and their relevance


  • Eni
- i.     work on the augmentation of the NeuroImage paper (write / learn LATEX / become comfortable with the experimental techniques / analyze the data / interpret the results / finish) 
- ii. help prepare preliminary results for the collaboration with S. Correia et. al 
- iii. improve computational linear algebra skills 
- iv. learn about visualization techniques 
- v. improve programming skills
- vi. gain confidence as a researcher, while learning from the other people in the group & working independently 


  • Jadrian
- Papers: make progress on all, submit one or two to ISMRM (abstracts / posters due Nov. 12th)
- Work on Jack Simon's longitudinal data, motivating 
- connective coherence maps 
- planar differential measures 
- learning statistics for data analysis
- Write a numerical analysis paper on orientation-dependent tractwise scalar measures like parallel and perpendicular diffusivity
- Develop a WM microstructure model; maybe look for a neuroanatomy collaborator? 
- Continue to support data processing for Ron Cohen's HIV study
- Keep CS137 running smoothly 
- Resubmit comparison visualization paper to EuroVis (abstracts due Nov. 28) 
- Continue cleaning up and generalizing the pipeline 
- put components in $G 
- master build scripts in a language that has conditionals (can Make do this?) 
- keep up to date with processing for all different data sources
- Document everything I come across in the wiki
- dhl sez: get some paper drafts done now!
  • Jian
- Papers:
  * Submit the massing study work to VR 3DUI symposium (abstract due on Oct 24, paper due on Oct 31
  * Dr. Bowman needs the draft by Oct 10th.
  * Finish the ISVC symposium panel presentation by Dec 3 2008
  * Finish the I3D paper (or TVCG) by Oct 24. Extended from SICB work
  * Help with flow study. Hope to get the paper out by Nov 2. (according to Andy F.)
- Job
  * Finish faculty search dossier draft by September 22 (keep discussing this with Prof. David Laidlaw)
  * Look for / create the list of job potentials (done the file. keep improving)
  * Ask for recommendation letters (done by Sep 29)
  * Update my web page
  * Start presentation slides
  * Proposal 
  * Finish the NSF proposal by Nov.1 (or Dec? depending on the size of the proposal).
  * Start early to get the coPI informed! who are they?
  * Discuss main ideas
- Waiting stage:
  * Devon's paper (finish it right away after getting feedback from Prof. Laidlaw, query Prof. Banks)
- Supporting role
  * Continue to support vis group report, bat group, other vis groupers' work (hope to collaborate / guide students on some cog / interaction related work that I know well.)
  * Fulfill community service obligations (VR 2009 program committee, ISVC committee, and numerous review requests.
- Done:
  * Finish the Display paper by Sep 19 and submit to CHI (done)
  * Finish the Bat paper and submit to SICB by Sep 9 (done).  
  * Finish the ISVC panel submission by Sep. 22 (done).
- Not sure stuff:
  * Finish the book chapter about the VR for eduction abstract by Nov 15 2008 and chapter by March 15 2009 (if accepted)
- Dr. Setareh's work
- dhl sez: adjust for reality (eg devon paper), discuss things only when necessary, doing chapter?, CoPI question?
  • Laura
   ⁃    Keep improving my ethic of work
   ⁃    Get experience on running experiments with humans
   ⁃    Improve my experimental design skills
   ⁃    Develop my scientific writing skills
   ⁃    Have a project finished that can be my master's thesis
   ⁃    Try to get a paper that can hopefully be submitted
  • Radu
- resubmit protein paper
- to Bioinformatics by Sept 30. 
- to TVCG if answer not positive and response comes before Dec 1.
- develop and implement a paper for Vis2009
- write 1 page abstracts/proposals for ideas to evaluate them
- Phd topic
- write 2 page abstractrs/proposals for ideas and evaluate them (contain lit search)
- at least one proposal by the end of Oct. and one by the end of Nov.
- make progress in Benoist lab
- write the NIH report  for Immgen as it should look at the end of the semester (by Sept 30)
- genome-viewer (deploy for use, display at Broad)
- have Leo and other people from the Lab use proteinApp; produce a document with their workflows and suggestions
- port genomic data into proteinApp
- create a project plan for cell lineage analysis
- monitor, help and guide David Ginsburg
- dhl sez: responsiveness, deliverables
  • Sidra
- visweb page per pub for images etc
  • Trevor
 -  1.  Finish TMI Paper.
 -  2.  Revise nerve orientation paper, submit to eurovis.                  Abstract Submission: Nov 28, 2008 
               Paper Submission: Dec 05, 2008 
 -  3.  Consider options for i3D submission.
 -  4.  Apply for NSF Fellowship.
 -  5.  Evaluate plans for the summer (if those plans might need to be acted on sooner rather than later).
 -  6.  Research comps at the end of the semester?
 -  7.  Get through my classes.
 -  8.  Refine long-term project ideas.
 -  9.  Try to protect my time more effectively.
  • Wenjin
- pass research comps 
- vis conference: poster and presentation 
- Caltech macaque data working:
- make sure tensor corrected
- show tube
- acquisition parameters verified with caltech
- microscopic images of histological scans obtained
- ISMRM paper submission on diffusion model + microstructure parameters (axon radius, etc) measurement paper (11/12) 
- Look into building vis posters into a Euro vis submission (11/28)
- Continue support Steve's and Ron's group (Anna, Win, etc) working with brainapp


  • Wudan
- play with google analytics
- ? successes wiki
- demo menu