Wrist Pipeline Technical Details: Difference between revisions
Jump to navigation
Jump to search
New page: #Wrist scan (e.g., CT) �multiple positions including “neutral pose”� $G: N/A (done at Engineering) �Output: volume image (multiple 2D slices forming stack)� #For Neutral posit... |
No edit summary |
||
| Line 1: | Line 1: | ||
#Wrist scan (e.g., CT) | #Wrist scan (e.g., CT) | ||
:multiple positions including “neutral pose” | |||
$G: N/A (done at Engineering) | :$G: N/A (done at Engineering) | ||
:Output: volume image (multiple 2D slices forming stack) | |||
#For Neutral position, for each bone, for each slice, draw contour by hand | |||
#For Neutral position, for each bone, for each slice, draw contour by | :$G: N/A (done at Engineering) | ||
:Output: Point Cloud (i.e., a “.stack” file) | |||
Classify/segmentation/ | #Classify/segmentation/registration | ||
:INPUT: a) crop_values.txt, b) .iv files for point clouds w/ “mimcs”, c) original scan to MRI (uses stack files) | |||
:scripts: project/wrist/pipeline/batchGen.py | |||
:$G: project/wrist/program/registration/ | |||
:$G: project/wrist/program/visualizer/ [Windows program] | |||
:Output: (files in “auto_registr_results/” directory) | |||
Inter-bone distance fields�INPUT: inertial results (w/ matlab code in Engineering -- .dat files)�INPUT: a) .iv files, b) RT files, c) inertial files (.dat files)�scripts: project/wrist/pipeline/joints_one_linux.sh�scripts: project/wrist/pipeline/joints_one_linux.sh �$G: project/wrist/program/distancefield/�$G: project/wrist/program/jointViewer/ | Inter-bone distance fields�INPUT: inertial results (w/ matlab code in Engineering -- .dat files)�INPUT: a) .iv files, b) RT files, c) inertial files (.dat files)�scripts: project/wrist/pipeline/joints_one_linux.sh�scripts: project/wrist/pipeline/joints_one_linux.sh �$G: project/wrist/program/distancefield/�$G: project/wrist/program/jointViewer/ | ||
Growing cartilage�$G: project/wrist/program/cartilage/�$G: project/wrist/program/jointCartilageViewer/ | Growing cartilage�$G: project/wrist/program/cartilage/�$G: project/wrist/program/jointCartilageViewer/ | ||
Revision as of 15:30, 11 September 2009
- Wrist scan (e.g., CT)
- multiple positions including “neutral pose”
- $G: N/A (done at Engineering)
- Output: volume image (multiple 2D slices forming stack)
- For Neutral position, for each bone, for each slice, draw contour by hand
- $G: N/A (done at Engineering)
- Output: Point Cloud (i.e., a “.stack” file)
- Classify/segmentation/registration
- INPUT: a) crop_values.txt, b) .iv files for point clouds w/ “mimcs”, c) original scan to MRI (uses stack files)
- scripts: project/wrist/pipeline/batchGen.py
- $G: project/wrist/program/registration/
- $G: project/wrist/program/visualizer/ [Windows program]
- Output: (files in “auto_registr_results/” directory)
Inter-bone distance fields�INPUT: inertial results (w/ matlab code in Engineering -- .dat files)�INPUT: a) .iv files, b) RT files, c) inertial files (.dat files)�scripts: project/wrist/pipeline/joints_one_linux.sh�scripts: project/wrist/pipeline/joints_one_linux.sh �$G: project/wrist/program/distancefield/�$G: project/wrist/program/jointViewer/
Growing cartilage�$G: project/wrist/program/cartilage/�$G: project/wrist/program/jointCartilageViewer/