3rd Party Diffusion MRI Software: Difference between revisions
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| [http://amide.sourceforge.net AMIDE] || Lin, Win || {{y}} || {{n}} || Graphical tool similar to FSL for viewing, registration, etc. | | [http://amide.sourceforge.net AMIDE] || Lin, Win || {{y}} || {{n}} || Graphical tool similar to FSL for viewing, registration, etc. | ||
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| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] || Matlab || {{y}} || {{n}} || Designed for data sequences, as found in fMRI studies. | | [http://www.fil.ion.ucl.ac.uk/spm/ SPM] || Matlab || {{y}} || {{n}} || Designed for data sequences, as found in fMRI studies. | ||
Revision as of 02:40, 2 July 2009
This page is a repository for information about programs that other people have written to process and visualize diffusion MRI data. By examining features of these other programs, we may get inspiration for improvements in our own work.
| Name | Platform | src | inst | Notes |
|---|---|---|---|---|
| 3D Slicer | Lin, Win, Mac | Y | N | |
| FSL | Lin, Win, Mac | Y | N | GUI, plus CLI for individual processing steps. Contains FLIRT, etc. |
| MedINRIA | Lin, Win, Mac | N | N | |
| Camino | Java | Y | N | No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives. |
| DTI-Query | Lin, Win, Mac | Y | N | |
| CINCH | Lin, Win, Mac | N | N | |
| MRI Studio (formerly DTI Studio) | Win | N | N | |
| Trackvis and Diffusion Toolkit | Lin, Win, Mac | N | N | Despite the name, Diffusion Toolkit is a GUI program, not a library. |
| Freesurfer | Lin, Mac | N | N | GUI, plus CLI for individual processing steps. |
| Brain Voyager | Lin, Win, Mac | N | N | Yet another diffusion MRI GUI program. Commercial license for all users. |
| XMedCon | Lin, Win | Y | Y | Command-line converter for various medical imaging file formats. |
| AMIDE | Lin, Win | Y | N | Graphical tool similar to FSL for viewing, registration, etc. |
| SPM | Matlab | Y | N | Designed for data sequences, as found in fMRI studies. |
| AFNI | Lin, Mac | Y | N | A GUI tool like Slicer mainly designed for fMRI data. |
See Also
- 3rd Party Visualization Software, which includes toolkits whose functionality is a superset of diffusion MRI processing.
- NITRC, the NIH's Sourceforge-like repository of neuroimaging software
- IDoImaging.com, a database of freeware medical imaging programs and libraries