Registration: Difference between revisions

Revision as of 17:50, 7 April 2009

Upload all Files and create the subject directory (this is done)
Run batchGen.pl to create the master batch files- (you should start here)
1. located for now at: /map/gfx0/data/wrist/batchfiles/linuxconvert/batchGen.pl
2. should always be run from the top level of the subject directory
3. the first time you run it, run with the --crop option, so it imports the data from the crop_values.txt file.
4. batchGen.pl should create three files: regbatch, subsetbatch, & unixbatch. unixbatch is the master file that calls the other three
5. /map/gfx0/data/wrist/batchfiles/linuxconvert/batchGen.pl --crop
Run unixbatch from the top level of the subject directory.
1. This should go through and run all the major steps
2. ./unixbatch
After unixbatch finishes, you need to validate the output of the registration steps
1. If there are errors, re-run batchGen.pl, without the --crop option, and choose NOT to re-run all parts. Then let it hopefully help you through the process.

Revision as of 17:49, 7 April 2009 view source Andrew Forsberg (talk \| contribs) 235 edits No edit summary ← Older edit		Revision as of 17:50, 7 April 2009 view source Andrew Forsberg (talk \| contribs) 235 edits No edit summary Newer edit →
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	Compiling the CS Carpal Pipeline		[https://wiki.brown.edu/confluence/display/orthobio/Compiling+the+CS+Carpal+Pipeline\|Compiling the CS Carpal Pipeline]

	#Upload all Files and create the subject directory (this is done)		#Upload all Files and create the subject directory (this is done)