Brain anatomy: Difference between revisions

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This page is a dumping ground for anatomical terms that come up in conversation with neuroscientists, phrased (hopefully!) in a way that CS people can understand them.  Click a tract name for specific information, including instructions for segmenting the tract out of a tractogram in [[Brainapp]].
This page is a dumping ground for anatomical terms that come up in conversation with neuroscientists, phrased (hopefully!) in a way that CS people can understand them and locate them in the brain.  Click a tract name for more detailed information, including instructions for segmenting the tract out of a tractogram in [[Brainapp]].


[[Image:Brain sagittal section.jpg|thumb|300px|right|A sagittal section of a human brain.  Click this image for a high-res version in which you can read the annotations.]]
[[Image:Brain sagittal section.jpg|thumb|300px|right|A sagittal section of a human brain.  Click this image for a high-res version in which you can read the annotations.]]
; Cingulum / cingulum bundle
; [[/Cingulum bundle|Cingulum / cingulum bundle]]
: White matter fibers mainly projecting from the cingulate gyrus (C-shaped bulge in the surface of the mid-sagittal cerebrum that surrounds the corpus callosum) to the parahippocampal gyrus and adjacent temporal cortex, thereby connecting frontal and parietal lobes (neocortex) with the limbic system. Cingulum bundle also includes aminergic afferent fibers from the brain stem.
: White matter fibers located just superior to the corpus callosum, but running anterior-posterior.  In a para-sagittal section, they look like a letter C turned on its side, with the tips pointing inferior, stacked right on top of the CC.  In a coronal section, they look like two small circles just superior to the CC on either side of the interhemispheric fissure.
; Corona radiata
; Corona radiata
: A fan-shaped sheet of WM that radiates from the brain stem superior to the cortex.
: A fan-shaped sheet of WM that radiates superior (upward) from the brain stem to the cortex in each hemisphere.  The fibers of the corona radiata run superior-inferior, and the fanning is anterior-posterior.  The sheet is flat and thin in the left-right dimension; its orientation is approximated by a sagittal cutting plane.
; Corpus callosum (CC)
; Corpus callosum (CC)
: The large tract connecting the hemispheres.  In a mid-sagittal cutting plane, it looks like a letter C turned on its side, with the tips pointing inferior.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p8.html].  Moving around the CC from the back (posterior), it is subdivided into parts named:
: The large tract of left-right-running fibers connecting the hemispheres.  In a mid-sagittal cutting plane, it looks like a letter C turned on its side, with the tips pointing inferior.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p8.html].  Moving around the CC from the back (posterior), it is subdivided into parts named:
:; Splenium
:; Splenium
:: The posterior, slightly bulbous part of the CC.
:: The posterior, slightly bulbous part of the CC.
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: A major descending pathway that projects from the cerebral cortex to the spinal cord. It is the key pathway for voluntary movement (contrast it with the other major longitudinal but ascending pathway: the dorsal-column medial lemniscal system).   
: A major descending pathway that projects from the cerebral cortex to the spinal cord. It is the key pathway for voluntary movement (contrast it with the other major longitudinal but ascending pathway: the dorsal-column medial lemniscal system).   
; Forceps major / forceps posterior
; Forceps major / forceps posterior
: The posterior projection of the CC (from the splenium) into the occipital lobe.  In a transverse cutting plane, it looks like a letter C at the posterior portion of the brain with the tips pointing posterior.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p7.html].
: The posterior projection of the CC (from the splenium) into the occipital lobe (the back of the brain).  In a transverse section, it looks like a letter C at the posterior portion of the brain with the tips pointing posterior.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p7.html].
; Forceps minor / forceps anterior
; Forceps minor / forceps anterior
: The anterior projection of the CC (from the genu) into the cerebrum.  In a transverse cutting plane, it looks like a letter C at the anterior portion of the brain with the tips pointing anterior.  In other words, it looks sort of like a pair of mandibles over the eyes.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p7.html].
: The anterior projection of the CC (from the genu) into the cerebrum (the front of the brain).  In a transverse section, it looks like a letter C at the anterior portion of the brain with the tips pointing anterior.  In other words, it looks sort of like a pair of mandibles over the eyes.  See [http://anatomy.uams.edu/anatomyhtml/atlas_html/n1a5p7.html].
; Fornix
; Fornix
: ???
: ???

Revision as of 14:35, 9 March 2009

This page is a dumping ground for anatomical terms that come up in conversation with neuroscientists, phrased (hopefully!) in a way that CS people can understand them and locate them in the brain. Click a tract name for more detailed information, including instructions for segmenting the tract out of a tractogram in Brainapp.

A sagittal section of a human brain. Click this image for a high-res version in which you can read the annotations.
Cingulum / cingulum bundle
White matter fibers located just superior to the corpus callosum, but running anterior-posterior. In a para-sagittal section, they look like a letter C turned on its side, with the tips pointing inferior, stacked right on top of the CC. In a coronal section, they look like two small circles just superior to the CC on either side of the interhemispheric fissure.
Corona radiata
A fan-shaped sheet of WM that radiates superior (upward) from the brain stem to the cortex in each hemisphere. The fibers of the corona radiata run superior-inferior, and the fanning is anterior-posterior. The sheet is flat and thin in the left-right dimension; its orientation is approximated by a sagittal cutting plane.
Corpus callosum (CC)
The large tract of left-right-running fibers connecting the hemispheres. In a mid-sagittal cutting plane, it looks like a letter C turned on its side, with the tips pointing inferior. See [1]. Moving around the CC from the back (posterior), it is subdivided into parts named:
Splenium
The posterior, slightly bulbous part of the CC.
Body
The more-or-less flat part of the CC between the splenium and the genu.
Genu
The anterior part of the CC, where it bends back on itself. "Genu" means "knee".
Rostrum
The part of the CC inferior and posterior to the genu.
Corticospinal tract (CST)
A major descending pathway that projects from the cerebral cortex to the spinal cord. It is the key pathway for voluntary movement (contrast it with the other major longitudinal but ascending pathway: the dorsal-column medial lemniscal system).
Forceps major / forceps posterior
The posterior projection of the CC (from the splenium) into the occipital lobe (the back of the brain). In a transverse section, it looks like a letter C at the posterior portion of the brain with the tips pointing posterior. See [2].
Forceps minor / forceps anterior
The anterior projection of the CC (from the genu) into the cerebrum (the front of the brain). In a transverse section, it looks like a letter C at the anterior portion of the brain with the tips pointing anterior. In other words, it looks sort of like a pair of mandibles over the eyes. See [3].
Fornix
???
Inferior longitudinal fasciculus (ILF)
???
Internal capsule
???
Superior longitudinal fasciculus (SLF)
???
Thalamus
Major relay nuclei (a gray matter structure) in the diencephalon (division of the brain primarily containing thalamus and hypothalamus in mature brain). Most sensory information is carried to the thalamus first (i.e., via ascending tracts) and then relayed to the cerebral cortex. Similarly, neural signals controlling movements, learning, memory and emotions bound to sub-cortical structures are relayed by the thalamus to their final destinations.
Uncinate fasciculus
???

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