In-House Diffusion MRI Software: Difference between revisions
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* <tt>mri2raw</tt> | * <tt>mri2raw</tt> | ||
* <tt>mri_to_avw</tt> | * <tt>mri_to_avw</tt> | ||
* <tt>mriatlas</tt> | * <tt>mriatlas</tt> --- Create a PDF "atlas" of one [[MRIimage]] or a collection of them. | ||
* <tt>mribrukerparms</tt> | * <tt>mribrukerparms</tt> | ||
* <tt>mricoordchg</tt> | * <tt>mricoordchg</tt> | ||
* <tt>mricrop</tt> | * <tt>mricrop</tt> --- Crop (or pad) an [[MRIimage]] to a new size, measured in voxels. See also <tt>diffusionResize.py</tt>. | ||
* <tt>mridfit</tt> | * <tt>mridfit</tt> --- Fit diffusion tensors to a collection of [[MRIimage]] DWIs. See also <tt>run_mridfit.py</tt>. | ||
* <tt>mriecholabel</tt> | * <tt>mriecholabel</tt> | ||
* <tt>mriechoref</tt> | * <tt>mriechoref</tt> | ||
* <tt>mrifilt3</tt> | * <tt>mrifilt3</tt> --- Apply a linear filter to an [[MRIimage]]. Generally used for resampling. See also <tt>diffusionResize.py</tt>. | ||
* <tt>mriflipX</tt> | * <tt>mriflipX</tt> --- Flip the X coordinate in an [[MRIimage]] DTI. Superseded by <tt>mritensormult</tt>. | ||
* <tt>mriften</tt> | * <tt>mriften</tt> | ||
* <tt>mrigetecholabel</tt> | * <tt>mrigetecholabel</tt> | ||
* <tt>mrigetechoref</tt> | * <tt>mrigetechoref</tt> | ||
* <tt>mrihalf</tt> | * <tt>mrihalf</tt> | ||
* <tt>mrihdr</tt> | * <tt>mrihdr</tt> --- Read the header of an [[MRIimage]] file. | ||
* <tt>mrilentil</tt> | * <tt>mrilentil</tt> | ||
* <tt>mrilentil2</tt> | * <tt>mrilentil2</tt> | ||
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* <tt>mrireadTens</tt> | * <tt>mrireadTens</tt> | ||
* <tt>mrireadTensInterleave</tt> | * <tt>mrireadTensInterleave</tt> | ||
* <tt>mrislice</tt> | * <tt>mrislice</tt> --- Extract a slice from an [[MRIimage]] volume. | ||
* <tt>mrisubset</tt> | * <tt>mrisubset</tt> | ||
* <tt>mritensor_v0</tt> | * <tt>mritensor_v0</tt> | ||
* <tt>mritensormult</tt> | * <tt>mritensormult</tt> --- Apply a linear transformation to all the tensors in an [[MRIimage]] DTI. | ||
* <tt>mritransp</tt> | * <tt>mritransp</tt> | ||
* <tt>mrixform</tt> | * <tt>mrixform</tt> | ||
* <tt>nifti2mriimage</tt> | * <tt>nifti2mriimage</tt> --- Convert a [[NIfTI]] DWI to an [[MRIimage]] DWI. | ||
* <tt>startmricro</tt> | * <tt>startmricro</tt> | ||
* <tt>test-libmri</tt> | * <tt>test-libmri</tt> | ||
Revision as of 22:25, 12 January 2009
The following is a list of all the unique programs in $G containing the strings "mri" or "tube". Some of it may actually be 3rd-party software, but eventually this page should detail all the programs we've developed to handle diffusion MRI data.
- mri2analyze
- mri2raw
- mri_to_avw
- mriatlas --- Create a PDF "atlas" of one MRIimage or a collection of them.
- mribrukerparms
- mricoordchg
- mricrop --- Crop (or pad) an MRIimage to a new size, measured in voxels. See also diffusionResize.py.
- mridfit --- Fit diffusion tensors to a collection of MRIimage DWIs. See also run_mridfit.py.
- mriecholabel
- mriechoref
- mrifilt3 --- Apply a linear filter to an MRIimage. Generally used for resampling. See also diffusionResize.py.
- mriflipX --- Flip the X coordinate in an MRIimage DTI. Superseded by mritensormult.
- mriften
- mrigetecholabel
- mrigetechoref
- mrihalf
- mrihdr --- Read the header of an MRIimage file.
- mrilentil
- mrilentil2
- mrimask
- mrimaxmin
- mrimkI0
- mrimultifit_9
- mrireadScaleByte
- mrireadScaleFloat
- mrireadScaleInt
- mrireadScaleShort
- mrireadTens
- mrireadTensInterleave
- mrislice --- Extract a slice from an MRIimage volume.
- mrisubset
- mritensor_v0
- mritensormult --- Apply a linear transformation to all the tensors in an MRIimage DTI.
- mritransp
- mrixform
- nifti2mriimage --- Convert a NIfTI DWI to an MRIimage DWI.
- startmricro
- test-libmri
- tubeClusterInter
- tubeClusterIntra
- tubeFA
- tubeNorm
- tubecut
- tubedist
- tubefit
- tubefitD
- tubegen
- tubegen.old
- tubeinfo
- tubelength