In-House Diffusion MRI Software: Difference between revisions
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The following is a list of all the unique programs in $G containing the strings "mri" or "tube". Some of it may actually be [[3rd Party Diffusion MRI Software|3rd-party software]], but eventually this page should detail all the programs we've developed to handle [[diffusion MRI]] data. | The following is a list of all the unique programs in $G containing the strings "mri" or "tube". Some of it may actually be [[3rd Party Diffusion MRI Software|3rd-party software]], but eventually this page should detail all the programs we've developed to handle [[diffusion MRI]] data. | ||
< | * <tt>mri2analyze</tt> | ||
mri2analyze | * <tt>mri2raw</tt> | ||
mri2raw | * <tt>mri_to_avw</tt> | ||
mri_to_avw | * <tt>mriatlas</tt> — Create a PDF "atlas" of one [[MRIimage]] or a collection of them. | ||
mriatlas | * <tt>mribrukerparms</tt> | ||
mribrukerparms | * <tt>mricoordchg</tt> | ||
mricoordchg | * <tt>mricro</tt> | ||
mricro | * <tt>mricrop</tt> — Crop (or pad) an [[MRIimage]] to a new size, measured in voxels. See also <tt>diffusionResize.py</tt>. | ||
mricrop | * <tt>mridfit</tt> — Fit diffusion tensors to a collection of [[MRIimage]] DWIs. See also <tt>run_mridfit.py</tt>. | ||
mridfit | * <tt>mriecholabel</tt> | ||
mriecholabel | * <tt>mriechoref</tt> | ||
mriechoref | * <tt>mrifilt3</tt> — Apply a linear filter to an [[MRIimage]]. Generally used for resampling. See also <tt>diffusionResize.py</tt>. | ||
mrifilt3 | * <tt>mriflipX</tt> — Flip the X coordinate in an [[MRIimage]] DTI. Superseded by <tt>mritensormult</tt>. | ||
* <tt>mriften</tt> | |||
mriflipX | * <tt>mrigetecholabel</tt> | ||
mriften | * <tt>mrigetechoref</tt> | ||
mrigetecholabel | * <tt>mrihalf</tt> | ||
mrigetechoref | * <tt>mrihdr</tt> — Read the header of an [[MRIimage]] file. | ||
mrihalf | * <tt>mrilentil</tt> | ||
mrihdr | * <tt>mrilentil2</tt> | ||
mrilentil | * <tt>mrimask</tt> | ||
mrilentil2 | * <tt>mrimaxmin</tt> | ||
mrimask | * <tt>mrimkI0</tt> | ||
mrimaxmin | * <tt>mrimultifit_9</tt> | ||
mrimkI0 | * <tt>mrireadScaleByte</tt> | ||
mrimultifit_9 | * <tt>mrireadScaleFloat</tt> | ||
mrireadScaleByte | * <tt>mrireadScaleInt</tt> | ||
mrireadScaleFloat | * <tt>mrireadScaleShort</tt> | ||
mrireadScaleInt | * <tt>mrireadTens</tt> | ||
mrireadScaleShort | * <tt>mrireadTensInterleave</tt> | ||
mrireadTens | * <tt>mrislice</tt> — Extract a slice from an [[MRIimage]] volume. | ||
mrireadTensInterleave | * <tt>mrisubset</tt> | ||
mrislice | * <tt>mritensor_v0</tt> | ||
mrisubset | * <tt>mritensormult</tt> — Apply a linear transformation to all the tensors in an [[MRIimage]] DTI. | ||
mritensor_v0 | * <tt>mritransp</tt> | ||
mritensormult | * <tt>mrixform</tt> | ||
mritransp | * <tt>nifti2mriimage</tt> — Convert [[NIfTI]] DWIs to [[MRIimage]] DWIs. | ||
mrixform | * <tt>startmricro</tt> | ||
nifti2mriimage | * <tt>test-libmri</tt> | ||
startmricro | * <tt>tubeClusterInter</tt> | ||
test-libmri | * <tt>tubeClusterIntra</tt> | ||
tubeClusterInter | * <tt>tubeFA</tt> | ||
tubeClusterIntra | * <tt>tubeNorm</tt> | ||
tubeFA | * <tt>tubecut</tt> | ||
tubeNorm | * <tt>tubedist</tt> | ||
tubecut | * <tt>tubefit</tt> | ||
tubedist | * <tt>tubefitD</tt> | ||
tubefit | * <tt>tubegen</tt> | ||
tubefitD | * <tt>tubegen.old</tt> | ||
tubegen | * <tt>tubeinfo</tt> | ||
tubegen.old | * <tt>tubelength</tt> | ||
tubeinfo | |||
tubelength | |||
</ | |||
[[Category:Diffusion MRI]][[Category:Software]] | [[Category:Diffusion MRI]][[Category:Software]] | ||
Revision as of 03:42, 29 December 2008
The following is a list of all the unique programs in $G containing the strings "mri" or "tube". Some of it may actually be 3rd-party software, but eventually this page should detail all the programs we've developed to handle diffusion MRI data.
- mri2analyze
- mri2raw
- mri_to_avw
- mriatlas — Create a PDF "atlas" of one MRIimage or a collection of them.
- mribrukerparms
- mricoordchg
- mricro
- mricrop — Crop (or pad) an MRIimage to a new size, measured in voxels. See also diffusionResize.py.
- mridfit — Fit diffusion tensors to a collection of MRIimage DWIs. See also run_mridfit.py.
- mriecholabel
- mriechoref
- mrifilt3 — Apply a linear filter to an MRIimage. Generally used for resampling. See also diffusionResize.py.
- mriflipX — Flip the X coordinate in an MRIimage DTI. Superseded by mritensormult.
- mriften
- mrigetecholabel
- mrigetechoref
- mrihalf
- mrihdr — Read the header of an MRIimage file.
- mrilentil
- mrilentil2
- mrimask
- mrimaxmin
- mrimkI0
- mrimultifit_9
- mrireadScaleByte
- mrireadScaleFloat
- mrireadScaleInt
- mrireadScaleShort
- mrireadTens
- mrireadTensInterleave
- mrislice — Extract a slice from an MRIimage volume.
- mrisubset
- mritensor_v0
- mritensormult — Apply a linear transformation to all the tensors in an MRIimage DTI.
- mritransp
- mrixform
- nifti2mriimage — Convert NIfTI DWIs to MRIimage DWIs.
- startmricro
- test-libmri
- tubeClusterInter
- tubeClusterIntra
- tubeFA
- tubeNorm
- tubecut
- tubedist
- tubefit
- tubefitD
- tubegen
- tubegen.old
- tubeinfo
- tubelength