3rd Party Diffusion MRI Software: Difference between revisions

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| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] || Matlab || {{y}} || {{n}} || Designed for data sequences, as found in fMRI studies.
| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] || Matlab || {{y}} || {{n}} || Designed for data sequences, as found in fMRI studies.
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| [http://xmedcon.sourceforge.net/ XMedCon] || Lin, Win || {{y}} || {{n}} || Command-line converter for various medical imaging file formats
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Revision as of 00:44, 16 January 2009

This page is a repository for information about programs that other people have written to process and visualize diffusion MRI data. By examining features of these other programs, we may get inspiration for improvements in our own work.

Name Platform src inst Notes
3D Slicer Lin, Win, Mac Y N
FSL Lin, Win, Mac Y N GUI, plus CLI for individual processing steps. Contains FLIRT, etc.
MedINRIA Lin, Win, Mac N N
Camino Java Y N No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
Teem Lin, Win, Mac Y N Gordon Kindlmann's library of raster filtering utilities, under active development.
DTI-Query Lin, Win, Mac Y N
CINCH Lin, Win, Mac N N
MRI Studio (formerly DTI Studio) Win N N
Trackvis and Diffusion Toolkit Lin, Win, Mac N N Despite the name, Diffusion Toolkit is a GUI program, not a library.
Freesurfer Lin, Mac N N GUI, plus CLI for individual processing steps.
Brain Voyager Lin, Win, Mac N N Commercial license for all users.
SPM Matlab Y N Designed for data sequences, as found in fMRI studies.
XMedCon Lin, Win Y N Command-line converter for various medical imaging file formats

See Also

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