Brainapp: Difference between revisions
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Brainapp is a program in the [[Diffusion MRI|Diffusion MRI project]] to view and measure white matter tractograms that have been generated by our [[Diffusion Processing Pipeline|processing pipeline]]. It can be run on the desktop, [[fishtank]], or [[cave]]. | Brainapp is a program in the [[Diffusion MRI|Diffusion MRI project]] to view and measure white matter tractograms that have been generated by our [[Diffusion Processing Pipeline|processing pipeline]]. It can be run on the desktop, [[fishtank]], or [[cave]]. | ||
=Running Brainapp= | == Running Brainapp == | ||
==Config Files== | === Config Files === | ||
===Defaults=== | ==== Defaults ==== | ||
===Customized=== | ==== Customized ==== | ||
===Automatically Customized with a Makefile=== | ==== Automatically Customized with a Makefile ==== | ||
=Interacting with Brainapp= | == Interacting with Brainapp == | ||
==With the mouse== | === With the mouse === | ||
Navigating in 3D space is achieved with the default [[G3D]] interactions: | Navigating in 3D space is achieved with the default [[G3D]] interactions: | ||
* '''Translate''': right-click and drag left or right as your first motion; after that, you can translate up and down, too. | * '''Translate''': right-click and drag left or right as your first motion; after that, you can translate up and down, too. | ||
| Line 19: | Line 19: | ||
Interaction with interface elements is all done with the middle mouse button. | Interaction with interface elements is all done with the middle mouse button. | ||
==With the keyboard== | === With the keyboard === | ||
{| {{Prettytable|width=50%}} | {| {{Prettytable|width=50%}} | ||
|- | |- | ||
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== See Also == | |||
* [[/bugs and feature requests|Brainapp bugs and feature requests]] | |||
[[Category:Software]][[Category:Diffusion MRI]] | [[Category:Software]][[Category:Diffusion MRI]] | ||
Latest revision as of 15:25, 12 March 2009
Brainapp is a program in the Diffusion MRI project to view and measure white matter tractograms that have been generated by our processing pipeline. It can be run on the desktop, fishtank, or cave.
Running Brainapp
Config Files
Defaults
Customized
Automatically Customized with a Makefile
Interacting with Brainapp
With the mouse
Navigating in 3D space is achieved with the default G3D interactions:
- Translate: right-click and drag left or right as your first motion; after that, you can translate up and down, too.
- Zoom: right-click and drag up or down.
- Rotate: right-click on a surface to set the rotation point. Right-click again and drag to rotate about that point.
Interaction with interface elements is all done with the middle mouse button.
With the keyboard
| Function | Key |
|---|---|
| Quit | Esc |
| Toggle anatomical plane | O |
| Toggle translucent plane | X |
| Toggle Statistics menu | C |
| Toggle ROI menu | V |
| Sketch selection | B |
| Automatic segfault | M |