Neuroimaging Systems

This page documents tools and projects related to software systems for dealing with neuroimaging data. The tools listed are some common visualization applications (some of which are general purpose). The projects listed either are generating a large amount of imaging data or developing systems to manage imaging data.

Tools

See also 3rd Party Diffusion MRI Software.

Volume Visualization

• FSLView
• MRIcron
• MedINRIA

Shape Visualization

• TrackVis
• ShapeViewer
• Paraview

Network Visualization

• Cytoscape
• Gephi
• ConnectomeViewer

Challenges

• Integration of volume, geometry, network, tabular data
• Query by subject, metadata, anatomy, or statistics
• Comparison across subject, modalities, metrics
• Coordinate systems, including rigid, affine, non-linear
• Memory and IO bottlenecks

Projects and Institutes

• University of Utah Center for Neuroimage Analysis
• Human Connectome Project Harvard-UCLA-MGH
• Human Connectome WU-Minn
• Mouse Connectome
• LONI Image Database Archive (IDA)
• Parkinson's Progression Marker's Initiative (PPMI)
• International Consortium of Brain Mapping (ICBM}
• Alzheimer's Disease Neuroimaging Initiative (ADNI)
• Biomedical Informatics Research Network (BIRN)
• National Alliance for Medical Image Computing (NA-MIC)
• Open Source Informatics for Biomedical Imaging Research (XNAT)
• Central Neuroimaging Data Archive