Neuroimaging Systems: Difference between revisions
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Ryan Cabeen (talk | contribs) Created page with "==Tools== Volume Visualization * [http://www.fmrib.ox.ac.uk/fsl/fslview/index.html FSLView] * [http://www.mccauslandcenter.sc.edu/mricro/mricron/ MRIcron] * [http://www-sop.i..." |
→Tools: added link to a previous round-up of third-party tools |
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This page documents tools and projects related to software systems for dealing with neuroimaging data. The tools listed are some common visualization applications (some of which are general purpose). The projects listed either are generating a large amount of imaging data or developing systems to manage imaging data. | |||
==Tools== | ==Tools== | ||
''See also [[3rd Party Diffusion MRI Software]].'' | |||
Volume Visualization | Volume Visualization | ||
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* <i>Comparison</i> across subject, modalities, metrics | * <i>Comparison</i> across subject, modalities, metrics | ||
* <i>Coordinate systems</i>, including rigid, affine, non-linear | * <i>Coordinate systems</i>, including rigid, affine, non-linear | ||
* <i>Memory</i> | * <i>Memory</i> and <i>IO</i> bottlenecks | ||
==Projects and Institutes== | ==Projects and Institutes== | ||
* [http://ucnia.org/ University of Utah Center for Neuroimage Analysis] | * [http://ucnia.org/ University of Utah Center for Neuroimage Analysis] | ||
* [http://www.humanconnectomeproject.org/ Human Connectome Project Harvard-UCLA-MGH] | * [http://www.humanconnectomeproject.org/ Human Connectome Project Harvard-UCLA-MGH] | ||
Latest revision as of 17:25, 19 January 2014
This page documents tools and projects related to software systems for dealing with neuroimaging data. The tools listed are some common visualization applications (some of which are general purpose). The projects listed either are generating a large amount of imaging data or developing systems to manage imaging data.
Tools
See also 3rd Party Diffusion MRI Software.
Volume Visualization
Shape Visualization
Network Visualization
Challenges
- Integration of volume, geometry, network, tabular data
- Query by subject, metadata, anatomy, or statistics
- Comparison across subject, modalities, metrics
- Coordinate systems, including rigid, affine, non-linear
- Memory and IO bottlenecks
Projects and Institutes
- University of Utah Center for Neuroimage Analysis
- Human Connectome Project Harvard-UCLA-MGH
- Human Connectome WU-Minn
- Mouse Connectome
- LONI Image Database Archive (IDA)
- Parkinson's Progression Marker's Initiative (PPMI)
- International Consortium of Brain Mapping (ICBM}
- Alzheimer's Disease Neuroimaging Initiative (ADNI)
- Biomedical Informatics Research Network (BIRN)
- National Alliance for Medical Image Computing (NA-MIC)
- Open Source Informatics for Biomedical Imaging Research (XNAT)
- Central Neuroimaging Data Archive