Registration: Difference between revisions

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New page: Compiling the CS Carpal Pipeline #Upload all Files and create the subject directory (this is done) #Run batchGen.pl to create the master batch files- (you should start here) ##located fo...
 
Most of these instructions have changed, and the linked page has the updated version.
 
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Compiling the CS Carpal Pipeline
[https://wiki.brown.edu/confluence/display/orthobio/Compiling+the+CS+Carpal+Pipeline|Compiling the CS Carpal Pipeline]


#Upload all Files and create the subject directory  (this is done)
[[Registration of Bones Across Positions#Technical Notes|Use instructions here]]
#Run batchGen.pl to create the master batch files- (you should start here)
##located for now at: /map/gfx0/data/wrist/batchfiles/linuxconvert/batchGen.pl
##should always be run from the top level of the subject directory
##the first time you run it, run with the --crop option, so it imports the data from the crop_values.txt file.
##batchGen.pl should create three files: regbatch, subsetbatch, & unixbatch. unixbatch is the master file that calls the other three
/map/gfx0/data/wrist/batchfiles/linuxconvert/batchGen.pl --cropRun unixbatch from the top level of the subject directory.
#This should go through and run all the major steps
##./unixbatch
#After unixbatch finishes, you need to validate the output of the registration steps
##If there are errors, re-run batchGen.pl, without the --crop option, and choose NOT to re-run all parts. Then let it hopefully help you through the process.

Latest revision as of 21:13, 9 April 2014

the CS Carpal Pipeline

Use instructions here

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