Wrist Pipeline Technical Details: Difference between revisions
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#Wrist scan (e.g., CT) | #Wrist scan (e.g., CT)<br>multiple positions including “neutral pose”<br>$G: N/A (done at Engineering)<br>Output: volume image (multiple 2D slices forming stack) | ||
#For Neutral position, for each bone, for each slice, draw contour by hand<br>$G: N/A (done at Engineering)<br>Output: Point Cloud (i.e., a “.stack” file) | |||
#Classify/segmentation/registration<br>INPUT: a) crop_values.txt, b) .iv files for point clouds w/ “mimcs”, c) original scan to MRI (uses stack files)<br>scripts: project/wrist/pipeline/batchGen.py<br>$G: project/wrist/program/registration/<br>$G: project/wrist/program/visualizer/ [Windows program]<br>Output: (files in “auto_registr_results/” directory) | |||
#Inter-bone distance fields<br>INPUT: inertial results (w/ matlab code in Engineering -- .dat files)<br>INPUT: a) .iv files, b) RT files, c) inertial files (.dat files)<br>scripts: project/wrist/pipeline/joints_one_linux.sh<br>scripts: project/wrist/pipeline/joints_one_linux.sh<br>$G: project/wrist/program/distancefield/<br>$G: project/wrist/program/jointViewer/ | |||
#For Neutral position, for each bone, for each slice, draw contour by hand | #Growing cartilage<br>$G: project/wrist/program/cartilage/<br>$G: project/wrist/program/jointCartilageViewer/ | ||
#Classify/segmentation/registration | |||
#Inter-bone distance fields | |||
Growing | |||
Revision as of 15:34, 11 September 2009
- Wrist scan (e.g., CT)
multiple positions including “neutral pose”
$G: N/A (done at Engineering)
Output: volume image (multiple 2D slices forming stack) - For Neutral position, for each bone, for each slice, draw contour by hand
$G: N/A (done at Engineering)
Output: Point Cloud (i.e., a “.stack” file) - Classify/segmentation/registration
INPUT: a) crop_values.txt, b) .iv files for point clouds w/ “mimcs”, c) original scan to MRI (uses stack files)
scripts: project/wrist/pipeline/batchGen.py
$G: project/wrist/program/registration/
$G: project/wrist/program/visualizer/ [Windows program]
Output: (files in “auto_registr_results/” directory) - Inter-bone distance fields
INPUT: inertial results (w/ matlab code in Engineering -- .dat files)
INPUT: a) .iv files, b) RT files, c) inertial files (.dat files)
scripts: project/wrist/pipeline/joints_one_linux.sh
scripts: project/wrist/pipeline/joints_one_linux.sh
$G: project/wrist/program/distancefield/
$G: project/wrist/program/jointViewer/ - Growing cartilage
$G: project/wrist/program/cartilage/
$G: project/wrist/program/jointCartilageViewer/