Joint space area calculations: Difference between revisions

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New page: (Liz Marai and Leor's notes for this process are at $G/src/jspBin/README.txt and $G/src/jspBin/trail_contact_areas.txt) Follow these steps to compute the distance maps: 1. Get required...
 
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(Liz Marai and Leor's notes for this process are at $G/src/jspBin/README.txt and $G/src/jspBin/trail_contact_areas.txt)
(Liz Marai and Leor's notes for this process are at [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]])




Follow these steps to compute the distance maps:
Follow these steps to compute the distance maps:


1. Get required data files into the data root directory
# Get required data files into the data root directory
        1. get the bone Geomagic meshes in OpenInventor format (e.g., <bone_tag>.iv)
## get the bone Geomagic meshes in OpenInventor format (e.g., <bone_tag>.iv)
        2. get the "animation file" for each bone, (e.g., <bone_tag>_anim.RT)
## get the "animation file" for each bone, (e.g., <bone_tag>_anim.RT)
        3. get anatomical coordinate system for each bone (e.g., <bone_tag>_coord.dat)  
## get anatomical coordinate system for each bone (e.g., <bone_tag>_coord.dat)
2. Prepare scripts
# Prepare scripts
        1. copy the "joints_one_linux" and "joints_linux" from $G/bin/jspBin/ to your data's top-level directory
## copy the "joints_one_linux" and "joints_linux" from $G/bin/jspBin/ to your data's top-level directory
        2. replace "set data_directory" lines in both with the path to your directory
## replace "set data_directory" lines in both with the path to your directory
        3. replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)
## replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)
        4. see further options at $G/src/jspBin/trail_contact_areas.txt  
## see further options at [[$G/src/jspBin/trail_contact_areas.txt]]
3. Run scripts
# Run scripts
        1. ./joints_one_linux
## ./joints_one_linux
        2. ./joints_linux  
## ./joints_linux


For more details, see $G/src/jspBin/README.txt and $G/src/jspBin/trail_contact_areas.txt.
For more details, see [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]].

Latest revision as of 15:01, 31 August 2009

(Liz Marai and Leor's notes for this process are at $G/src/jspBin/README.txt and $G/src/jspBin/trail_contact_areas.txt)


Follow these steps to compute the distance maps:

  1. Get required data files into the data root directory
    1. get the bone Geomagic meshes in OpenInventor format (e.g., <bone_tag>.iv)
    2. get the "animation file" for each bone, (e.g., <bone_tag>_anim.RT)
    3. get anatomical coordinate system for each bone (e.g., <bone_tag>_coord.dat)
  2. Prepare scripts
    1. copy the "joints_one_linux" and "joints_linux" from $G/bin/jspBin/ to your data's top-level directory
    2. replace "set data_directory" lines in both with the path to your directory
    3. replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)
    4. see further options at $G/src/jspBin/trail_contact_areas.txt
  3. Run scripts
    1. ./joints_one_linux
    2. ./joints_linux

For more details, see $G/src/jspBin/README.txt and $G/src/jspBin/trail_contact_areas.txt.

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