Jadrian Miles: /* Jadrian */

2010-05-20T23:34:40Z

Jadrian

← Older revision		Revision as of 23:34, 20 May 2010
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	# Further refine the thesis proposal in response to new information		# Further refine the thesis proposal in response to new information
			#* Complete
	# Create a list of papers to spawn from the proposal		# Create a list of papers to spawn from the proposal
			#* Complete (finally!)
	# Present the proposal formally to the department		# Present the proposal formally to the department
			#* Delayed until October
	# Implement a macrostructure model and derive it from diffusion data (by clustering or otherwise, with possible manual adjustment)		# Implement a macrostructure model and derive it from diffusion data (by clustering or otherwise, with possible manual adjustment)
			#* Mostly complete (slice-ring model from manual clustering of curves)
	# Create a 3D surface rendering of a macrostructure model instance		# Create a 3D surface rendering of a macrostructure model instance
			#* {{red\|Incomplete}}
	# Continue working with Ed Walsh, et al. to settle on some HARDI parameters		# Continue working with Ed Walsh, et al. to settle on some HARDI parameters
			#* Work is ongoing, but emphasis has shifted to a generic protocol for other studies
	# Take at least one HARDI scan, even if parameters have not been finalized		# Take at least one HARDI scan, even if parameters have not been finalized
			#* {{red\|Incomplete}}
	# Get preliminary histological data of some kind, either by doing it in-house, working with collaborators, or outsourcing		# Get preliminary histological data of some kind, either by doing it in-house, working with collaborators, or outsourcing
			#* {{red\|Incomplete}}
	# Continue working with DifSim/MCell developers to get source access and a working install here		# Continue working with DifSim/MCell developers to get source access and a working install here
			#* Continued to reach out but got very little response from these folks. May have to roll my own.
	# Derive a minimal set of microstructure measurements from histological data		# Derive a minimal set of microstructure measurements from histological data
			#* {{red\|Incomplete}}
	# Make a plan for a future summer industry or academic internship		# Make a plan for a future summer industry or academic internship
			#* Talked it over with dhl {{red\|but no written plan yet}}.
	# Make a plan for completing the outside minor requirements		# Make a plan for completing the outside minor requirements
			#* Talked it over with dhl {{red\|but no written plan or timing set down yet}}.

	<!--		<!--
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	----		----

	=== Radu ===		=== Radu ===
	#deploy my current work (as application or google maps) to: Christophe, Hardy, Art, and Neuroscience		#deploy my current work (as application or google maps) to: Christophe, Hardy, Art, and Neuroscience

David Laidlaw: /* David */

2010-05-14T18:15:00Z

David

← Older revision		Revision as of 18:15, 14 May 2010
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	----		----

	=== [[Jadrian]] ===		=== [[Jadrian]] ===

David Laidlaw: /* Current Plans and Goals (Spring '10) */

2010-05-14T18:10:19Z

Current Plans and Goals (Spring '10)

← Older revision		Revision as of 18:10, 14 May 2010
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	== ~~Current~~ Plans and Goals (Spring '10) ==		== Plans and Goals (Spring '10) ==

	=== [[User:Brad Berg\|Brad]] ===		=== [[User:Brad Berg\|Brad]] ===

David Laidlaw: New page: == Current Plans and Goals (Spring '10) == === Brad === Projects * Support the ongoing projects including collaborators. Active projects are wrist, brain, adviser, a...

2010-05-14T18:09:48Z

New page: == Current Plans and Goals (Spring '10) == === Brad === Projects * Support the ongoing projects including collaborators. Active projects are wrist, brain, adviser, a...

New page

== Current Plans and Goals (Spring '10) ==

=== [[User:Brad Berg|Brad]] ===

Projects

* Support the ongoing projects including collaborators. Active projects are wrist, brain, adviser, and protein.

* Assist Radu to integrate a test and any recent code.

* Contribute to the design and development of the new cave. This includes integrating g3d, vrpn and hosting vrg3d. Once the software is running simplify the configuration and provide a quick start path for student projects.

* Set up a distribution of diffusion imaging data.

Infrastructure

* Continue to write Wiki entries as needed.

* Continue setting up external software for students to use. Current imported packages are: blitz, cg, g3d, qt, camino, dtk, vrpn, glut, and sdl.

* Finish extending make files for local installs and kits for source and binary distributions.

* Continue to make improvements to the make files so they are easier to use.

* Upgrade migrated Linux code to work with gcc 4.3.

* Continue to integrate any new tests written by students into nightly test runs.

* Finish integrating the new version of the Nag libraries.

Knowledge

* Learn more about the cave; particularly vrg3d software development.

* Meet (SciVis talk) with students to address any integration issues.

* Learn how to manage a project using Source Forge.

----

=== Çağatay ===
#Stay alive through the military service.
#Focus on realizing the proposal timeline milestones.
#Submit 'On Coloring' to vis'10 and/or siggraph.
#Submit '2D Brain Maps' to vis'10 w/ Radu.
#Submit the non-parametric tract-based statistics paper to miccai'10.
#Submit the improved surface deformation paper to sgp'10 or siggraph asia'10.
#Develop new collaborations.
#Do not waste time on insignificant problems/collaborations.
#Add a 4th person (outside Brown) to the committee.
#Arrange an internship with someone who is the best in his/her field--consider MSR Cambridge, UK (vision group), MSR Richmond, US (graphics group), and IST Austria (topology group).
----

=== David ===
#get diffusion normals, one library, and one executable distributed
#wrist proposal submission (check with Trey?)
#support 5 phd students' + trevor's progress
#write a plan for HCI modeling work
#minimize professional service

----
=== [[Jadrian]] ===

* [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf‎|Initial thesis proposal, submitted 2009-06-22]]
* [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Proposal second revision, prepared 2009-10-15]]

# Further refine the thesis proposal in response to new information
# Create a list of papers to spawn from the proposal
# Present the proposal formally to the department
# Implement a macrostructure model and derive it from diffusion data (by clustering or otherwise, with possible manual adjustment)
# Create a 3D surface rendering of a macrostructure model instance
# Continue working with Ed Walsh, et al. to settle on some HARDI parameters
# Take at least one HARDI scan, even if parameters have not been finalized
# Get preliminary histological data of some kind, either by doing it in-house, working with collaborators, or outsourcing
# Continue working with DifSim/MCell developers to get source access and a working install here
# Derive a minimal set of microstructure measurements from histological data
# Make a plan for a future summer industry or academic internship
# Make a plan for completing the outside minor requirements



----
=== Radu ===
#deploy my current work (as application or google maps) to: Christophe, Hardy, Art, and Neuroscience
#gather structured feedback from the above mentioned labs
#write "Related Work" section of dissertation and updated thesis proposal.
#submit to Vis:
#*one paper on large map-like visualizations to InfoVis (100% submission probability),
#*one on comparing clusterings to VAST (50% submission probability)
#*one on 2D brain visualizations with Cagatay to Vis (25%).
#finalize my course requirements

----

=== [[User:Steven Gomez|Steve]] ===
# Staying on track for candidacy
## Complete programming comp (late January)
## Complete research comp proposal and presentation to committee (mid April)
## Do well in courses
# Research goals
## Explore current research in HCI related to creativity, and user interaction modeling
## Identify significant, well-scoped research project in this area for the research comp proposal
## Develop research skills, including paper reading/analysis and learning to communicate effectively
# Other academic goals
## Work on collaboration skills (finding and communicating with colleagues in or outside of CS)
## Work on time management and project planning
## Learn what working with DHL is like, his expectations, etc.
## Plan for the summer
----

=== [[User:Trevor O'Brien|Trevor]] ===

# I3D poster & demo
## Revised abstract: January 29
## Conference: February 19th (poster complete by February 17)
# Vis Papers - Iterate often
## Abstract: March 21
## Full paper: March 31
### Gene visualization paper
### Confocal microscopy paper
# Genome Research paper
# Grad TA for CS224
# Paper with Paul Kulesa
## Define goals contributions from Vis perspective
# Look for themes between work with Paul, Trey, and maybe Ben
## Coordinate spaces? (Tensor invariances?)
## Morphometrics? (Non-dimensionalization)
## Other feature detection?
# Organize code, papers, tools, other resources to be backed up, handed off

----

=== Wenjin ===
# Submit to MICCAI (March 11th) + good collaboration with Matt
# Successful ISMRM talk
# Prepare histology data - do homework about the right path to choose, acquire, and prepare the tissue
# Derive and test optimal double-PGSE imaging on Brown 3T scanner
# Propose by 10/15
# Submit MRM/TMI journal paper

-----

=== Eni ===
# Process and analyze data from subjects that are currently being scanned for the cmc study
# Write an abstract for the American Society of Biomechanincs Meeting (August 2010 in Prov.)on the TPM & MC1 surface curvatures and joint congruency
# Write a short paper that compares capitate/lunate/scaphoid movement in old and young subjects during dart thrower’s motion
# Learn algo & data structures
# Think about the direction of my work

-----

=== Fuyi ===
# Familiarize the working environment and check out any progress about vrg3d.
# Play with the vrg3d demo for a while and figure out what it does and how it works.
# Write a tutorial describing the way I have been using the demo to let others understand what it does.
# Define a feature that the demo needs in order to be more useful as an example to our group.
# Add the new feature to the demo.
# Think of an application that the vrg3d may be used on and try to construct a basic structure.

Plans and Goals/Spring 2010 - Revision history

Jadrian Miles: /* Jadrian */

David Laidlaw: /* David */

David Laidlaw: /* Current Plans and Goals (Spring '10) */

David Laidlaw: New page: == Current Plans and Goals (Spring '10) == === Brad === Projects * Support the ongoing projects including collaborators. Active projects are wrist, brain, adviser, a...