Neuroimaging Systems - Revision history

Jadrian Miles: /* Tools */ added link to a previous round-up of third-party tools

2014-01-19T17:25:52Z

Tools: added link to a previous round-up of third-party tools

← Older revision		Revision as of 17:25, 19 January 2014
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	==Tools==		==Tools==
			''See also [[3rd Party Diffusion MRI Software]].''

	Volume Visualization		Volume Visualization

Ryan Cabeen at 17:52, 14 June 2012

2012-06-14T17:52:36Z

← Older revision		Revision as of 17:52, 14 June 2012
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			This page documents tools and projects related to software systems for dealing with neuroimaging data. The tools listed are some common visualization applications (some of which are general purpose). The projects listed either are generating a large amount of imaging data or developing systems to manage imaging data.

	==Tools==		==Tools==

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	* <i>Comparison</i> across subject, modalities, metrics		* <i>Comparison</i> across subject, modalities, metrics
	* <i>Coordinate systems</i>, including rigid, affine, non-linear		* <i>Coordinate systems</i>, including rigid, affine, non-linear
	* <i>Memory</i> ~~problems~~		* <i>Memory</i> and <i>IO</i> bottlenecks

	==Projects and Institutes==		==Projects and Institutes==

Ryan Cabeen at 14:34, 31 May 2012

2012-05-31T14:34:41Z

← Older revision		Revision as of 14:34, 31 May 2012
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	==Projects and Institutes==		==Projects and Institutes==

	* [http://sdav.sci.utah.edu/ Scalable Data Management, Analysis, and Visualization (SDAV)]
	* [http://cedmav.sci.utah.edu/ Center for Extreme Data Management, Analysis, and Visualization (CEDMAV)]
	* [http://ucnia.org/ University of Utah Center for Neuroimage Analysis]		* [http://ucnia.org/ University of Utah Center for Neuroimage Analysis]
	* [http://www.humanconnectomeproject.org/ Human Connectome Project Harvard-UCLA-MGH]		* [http://www.humanconnectomeproject.org/ Human Connectome Project Harvard-UCLA-MGH]

Ryan Cabeen: Created page with "==Tools== Volume Visualization * [http://www.fmrib.ox.ac.uk/fsl/fslview/index.html FSLView] * [http://www.mccauslandcenter.sc.edu/mricro/mricron/ MRIcron] * [http://www-sop.i..."

2012-05-30T16:29:01Z

Created page with "==Tools== Volume Visualization * [http://www.fmrib.ox.ac.uk/fsl/fslview/index.html FSLView] * [http://www.mccauslandcenter.sc.edu/mricro/mricron/ MRIcron] * [http://www-sop.i..."

New page

==Tools==

Volume Visualization
* [http://www.fmrib.ox.ac.uk/fsl/fslview/index.html FSLView]
* [http://www.mccauslandcenter.sc.edu/mricro/mricron/ MRIcron]
* [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA]

Shape Visualization
* [http://trackvis.org/ TrackVis]
* [http://www.loni.ucla.edu/Software/ShapeViewer ShapeViewer]
* [http://www.paraview.org/ Paraview]

Network Visualization
* [http://www.cytoscape.org/ Cytoscape]
* [http://gephi.org/ Gephi]
* [http://connectomeviewer.org/viewer/ ConnectomeViewer]

Challenges
* Integration of volume, geometry, network, tabular data
* Query by subject, metadata, anatomy, or statistics
* Comparison across subject, modalities, metrics
* Coordinate systems, including rigid, affine, non-linear
* Memory problems

==Projects and Institutes==

* [http://sdav.sci.utah.edu/ Scalable Data Management, Analysis, and Visualization (SDAV)]
* [http://cedmav.sci.utah.edu/ Center for Extreme Data Management, Analysis, and Visualization (CEDMAV)]
* [http://ucnia.org/ University of Utah Center for Neuroimage Analysis]
* [http://www.humanconnectomeproject.org/ Human Connectome Project Harvard-UCLA-MGH]
* [http://www.neuroscienceblueprint.nih.gov/connectome/ Human Connectome WU-Minn]
* [http://www.mouseconnectome.org/ Mouse Connectome]
* [https://ida.loni.ucla.edu LONI Image Database Archive (IDA)]
* [http://www.ppmi-info.org/ Parkinson's Progression Marker's Initiative (PPMI)]
* [http://www.loni.ucla.edu/ICBM/ International Consortium of Brain Mapping (ICBM}]
* [http://adni.loni.ucla.edu/ Alzheimer's Disease Neuroimaging Initiative (ADNI)]
* [http://www.birncommunity.org/ Biomedical Informatics Research Network (BIRN)]
* [http://www.na-mic.org/ National Alliance for Medical Image Computing (NA-MIC)]
* [http://xnat.org/ Open Source Informatics for Biomedical Imaging Research (XNAT)]
* [https://cnda.wustl.edu/ Central Neuroimaging Data Archive]