Inter-bone Joint Space Area Calculations - Revision history

Eni Halilaj: Replacing page with 'This stage of the pipeline computes the shortest distance between surface points on the bones.'

2009-08-31T15:01:54Z

Replacing page with 'This stage of the pipeline computes the shortest distance between surface points on the bones.'

← Older revision		Revision as of 15:01, 31 August 2009
Line 1:		Line 1:
	This stage of the pipeline computes the shortest distance between surface points on the bones.		This stage of the pipeline computes the shortest distance between surface points on the bones.

	~~== Technical notes ==~~

	~~(Liz Marai and Leor's notes for this process are at [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]])~~


	~~Follow these steps to compute the distance maps:~~

	~~# Get required data files into the data root directory~~
	~~## get the bone Geomagic meshes in OpenInventor format (e.g., <bone_tag>.iv)~~
	~~## get the "animation file" for each bone, (e.g., <bone_tag>_anim.RT)~~
	~~## get anatomical coordinate system for each bone (e.g., <bone_tag>_coord.dat)~~
	~~# Prepare scripts~~
	~~## copy the "joints_one_linux" and "joints_linux" from $G/bin/jspBin/ to your data's top-level directory~~
	~~## replace "set data_directory" lines in both with the path to your directory~~
	~~## replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)~~
	~~## see further options at [[$G/src/jspBin/trail_contact_areas.txt]]~~
	~~# Run scripts~~
	~~## ./joints_one_linux~~
	~~## ./joints_linux~~

	~~For more details, see [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]].~~

Andrew Forsberg at 18:55, 2 June 2009

2009-06-02T18:55:40Z

← Older revision		Revision as of 18:55, 2 June 2009
Line 16:		Line 16:
	## replace "set data_directory" lines in both with the path to your directory		## replace "set data_directory" lines in both with the path to your directory
	## replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)		## replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)
			## see further options at [[$G/src/jspBin/trail_contact_areas.txt]]
			# Run scripts
			## ./joints_one_linux
			## ./joints_linux

			For more details, see [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]].

Andrew Forsberg: New page: This stage of the pipeline computes the shortest distance between surface points on the bones. == Technical notes == (Liz Marai and Leor's notes for this process are at [[$G/src/jspBin/R...

2009-06-02T18:47:55Z

New page: This stage of the pipeline computes the shortest distance between surface points on the bones. == Technical notes == (Liz Marai and Leor's notes for this process are at [[$G/src/jspBin/R...

New page

This stage of the pipeline computes the shortest distance between surface points on the bones.

== Technical notes ==

(Liz Marai and Leor's notes for this process are at [[$G/src/jspBin/README.txt]] and [[$G/src/jspBin/trail_contact_areas.txt]])

Follow these steps to compute the distance maps:

# Get required data files into the data root directory
## get the bone Geomagic meshes in OpenInventor format (e.g., <bone_tag>.iv)
## get the "animation file" for each bone, (e.g., <bone_tag>_anim.RT)
## get anatomical coordinate system for each bone (e.g., <bone_tag>_coord.dat)
# Prepare scripts
## copy the "joints_one_linux" and "joints_linux" from $G/bin/jspBin/ to your data's top-level directory
## replace "set data_directory" lines in both with the path to your directory
## replace bone tags with the ones of interest (e.g., bone_tag_1=sca15L and bone_tag_2=lun15L)