3rd Party Diffusion MRI Software - Revision history

Ryan Cabeen at 15:35, 2 November 2012

2012-11-02T15:35:45Z

← Older revision		Revision as of 15:35, 2 November 2012
Line 11:		Line 11:
	\| colspan=5 align=center \| '''Diffusion Processing & Tractography'''		\| colspan=5 align=center \| '''Diffusion Processing & Tractography'''
	\|-		\|-
	\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. ~~Contains FLIRT~~, ~~etc~~.		\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Includes implementations of mutual information linear registration, nonlinear registration, brain extraction, qball modelling, stick-and-ball modelling, probabilistic tractography. Includes numerous volumetric atlases.
	\|-		\|-
	\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{y}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.		\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{y}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.

Jadrian Miles at 18:15, 17 March 2010

2010-03-17T18:15:44Z

← Older revision		Revision as of 18:15, 17 March 2010
Line 38:		Line 38:
	\|-		\|-
	\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| An even less sophisticated and user-friendlier AFNI-like GUI tool.		\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| An even less sophisticated and user-friendlier AFNI-like GUI tool.
			\|-
			\| [http://www.cabiatl.com/mricro/mricron/index.html MRIcron] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| A GUI viewer for NIfTI. Also includes the <tt>dcm2nii</tt> DICOM-to-NIfTI conversion program.
	\|-		\|-
	\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.		\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.

Jadrian Miles at 18:11, 17 March 2010

2010-03-17T18:11:13Z

← Older revision		Revision as of 18:11, 17 March 2010
Line 8:		Line 8:
	! {{Hl2}} \| <abbr title="Installed in $G?">inst</abbr>		! {{Hl2}} \| <abbr title="Installed in $G?">inst</abbr>
	! {{Hl2}} \| Notes		! {{Hl2}} \| Notes
			\|-
			\| colspan=5 align=center \| '''Diffusion Processing & Tractography'''
	\|-		\|-
	\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.		\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.
Line 14:		Line 16:
	\|-		\|-
	\| [http://www.trackvis.org/ Trackvis and Diffusion Toolkit] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{y}} \|\| Equivalent, respectively, to [[Brainapp]] and the [[diffusion processing pipeline]], plus a GUI for the latter. Handles Q-ball imaging as well as DTI. Developed at MGH.		\| [http://www.trackvis.org/ Trackvis and Diffusion Toolkit] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{y}} \|\| Equivalent, respectively, to [[Brainapp]] and the [[diffusion processing pipeline]], plus a GUI for the latter. Handles Q-ball imaging as well as DTI. Developed at MGH.
	\|-
	~~\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.~~
	\|-
	\| [http://csci.ucsd.edu/projects/simulation.html DifSim] \|\| Lin \|\| {{y}} \|\| {{n}} \|\| Low-level physics simulations of diffusion MRI response in complex micro-environments. Built on top of [http://www.mcell.cnl.salk.edu/ MCell].
	\|-
	~~\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}~~
	\|-		\|-
	\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}		\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}
Line 26:		Line 22:
	\|-		\|-
	\| [http://graphics.stanford.edu/projects/dti/software/ CINCH] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}		\| [http://graphics.stanford.edu/projects/dti/software/ CINCH] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}
			\|-
			\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.
	\|-		\|-
	\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}} \|\| Interactive GUI to read/write images, compute DTIs and tractography, and create ROIs. Supposedly also includes [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2478641 Mori, et al.'s 2008 multi-subject DTI-based WM atlas].		\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}} \|\| Interactive GUI to read/write images, compute DTIs and tractography, and create ROIs. Supposedly also includes [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2478641 Mori, et al.'s 2008 multi-subject DTI-based WM atlas].
	\|-
	~~\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.~~
	\|-		\|-
	\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Yet another diffusion MRI GUI program. Commercial license for all users.		\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Yet another diffusion MRI GUI program. Commercial license for all users.
	\|-		\|-
	\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.		\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.
			\|-
			\| colspan=5 align=center \| '''Image Viewing & Conversion'''
			\|-
			\| [http://afni.nimh.nih.gov/afni AFNI] \|\| Lin, Mac \|\| {{y}} \|\| {{n}} \|\| A GUI tool for viewing, transforming, and analyzing 2D slice views of images, especially DICOMs. Very powerful, commonly used for published analysis, designed around medical research and clinical uses.
			\|-
			\| [http://www.osirix-viewer.com OsiriX] \|\| Mac \|\| {{y}} \|\| {{n}} \|\| A less sophisticated, user-friendlier, AFNI-like GUI tool for DICOM viewing.
			\|-
			\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| An even less sophisticated and user-friendlier AFNI-like GUI tool.
			\|-
			\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.
	\|-		\|-
	\| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] \|\| Matlab \|\| {{y}} \|\| {{n}} \|\| Designed for data sequences, as found in fMRI studies.		\| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] \|\| Matlab \|\| {{y}} \|\| {{n}} \|\| Designed for data sequences, as found in fMRI studies.
	\|-		\|-
	\| [http://~~afni~~.~~nimh~~.~~nih~~.~~gov/afni AFNI~~] \|\| Lin~~, Mac~~ \|\| {{y}} \|\| {{n}} \|\| ~~A GUI tool like Slicer mainly designed for fMRI data~~.		\| colspan=5 align=center \| '''Diffusion Simulation'''
			\|-
			\| [http://csci.ucsd.edu/projects/simulation.html DifSim] \|\| Lin \|\| {{y}} \|\| {{n}} \|\| Low-level physics simulations of diffusion MRI response in complex micro-environments. Built on top of [http://www.mcell.cnl.salk.edu/ MCell].
	\|}		\|}

Jadrian Miles at 20:21, 15 December 2009

2009-12-15T20:21:58Z

← Older revision		Revision as of 20:21, 15 December 2009
Line 16:		Line 16:
	\|-		\|-
	\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.		\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.
			\|-
			\| [http://csci.ucsd.edu/projects/simulation.html DifSim] \|\| Lin \|\| {{y}} \|\| {{n}} \|\| Low-level physics simulations of diffusion MRI response in complex micro-environments. Built on top of [http://www.mcell.cnl.salk.edu/ MCell].
	\|-		\|-
	\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}

Jadrian Miles at 18:47, 4 December 2009

2009-12-04T18:47:58Z

← Older revision		Revision as of 18:47, 4 December 2009
Line 8:		Line 8:
	! {{Hl2}} \| <abbr title="Installed in $G?">inst</abbr>		! {{Hl2}} \| <abbr title="Installed in $G?">inst</abbr>
	! {{Hl2}} \| Notes		! {{Hl2}} \| Notes
			\|-
			\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.
			\|-
			\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{y}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
			\|-
			\| [http://www.trackvis.org/ Trackvis and Diffusion Toolkit] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{y}} \|\| Equivalent, respectively, to [[Brainapp]] and the [[diffusion processing pipeline]], plus a GUI for the latter. Handles Q-ball imaging as well as DTI. Developed at MGH.
			\|-
			\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.
	\|-		\|-
	\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}
	\|-
	~~\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.~~
	\|-		\|-
	\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}		\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}
	\|-
	\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{y}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
	\|-		\|-
	\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}
Line 21:		Line 25:
	\| [http://graphics.stanford.edu/projects/dti/software/ CINCH] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}		\| [http://graphics.stanford.edu/projects/dti/software/ CINCH] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}
	\|-		\|-
	\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}}		\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}} \|\| Interactive GUI to read/write images, compute DTIs and tractography, and create ROIs. Supposedly also includes [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2478641 Mori, et al.'s 2008 multi-subject DTI-based WM atlas].
	\|-
	\| [http://www.~~trackvis~~.~~org~~/ ~~Trackvis and Diffusion Toolkit~~] ~~\|\| Lin, Win, Mac \|\| {{n}} \|\| {{y}} \|\| Despite the name, Diffusion Toolkit is a GUI program, not a library~~.
	\|-		\|-
	\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.		\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.
	\|-		\|-
	\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Yet another diffusion MRI GUI program. Commercial license for all users.		\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Yet another diffusion MRI GUI program. Commercial license for all users.
	\|-
	~~\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.~~
	\|-		\|-
	\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.		\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.

Jadrian Miles: Brad installed some stuff!

2009-11-06T00:54:34Z

Brad installed some stuff!

← Older revision		Revision as of 00:54, 6 November 2009
Line 11:		Line 11:
	\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://www.slicer.org/ 3D Slicer] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}
	\|-		\|-
	\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.		\| [http://www.fmrib.ox.ac.uk/fsl/ FSL] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{y}} \|\| GUI, plus CLI for individual processing steps. Contains FLIRT, etc.
	\|-		\|-
	\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}		\| [http://www-sop.inria.fr/asclepios/software/MedINRIA/ MedINRIA] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}}
	\|-		\|-
	\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{n}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.		\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{y}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
	\|-		\|-
	\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}
Line 23:		Line 23:
	\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}}		\| [http://mristudio.org MRI Studio] (formerly DTI Studio) \|\| Win \|\| {{n}} \|\| {{n}}
	\|-		\|-
	\| [http://www.trackvis.org/ Trackvis and Diffusion Toolkit] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Despite the name, Diffusion Toolkit is a GUI program, not a library.		\| [http://www.trackvis.org/ Trackvis and Diffusion Toolkit] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{y}} \|\| Despite the name, Diffusion Toolkit is a GUI program, not a library.
	\|-		\|-
	\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.		\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.

Jadrian Miles at 02:40, 2 July 2009

2009-07-02T02:40:18Z

← Older revision		Revision as of 02:40, 2 July 2009
Line 32:		Line 32:
	\|-		\|-
	\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.		\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.
	\|-
	~~\| [http://www.dclunie.com/dicom3tools.html DICOM3tools] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| Command-line tool for reading DICOM headers, written by a member of the DICOM standards committee.~~
	\|-		\|-
	\| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] \|\| Matlab \|\| {{y}} \|\| {{n}} \|\| Designed for data sequences, as found in fMRI studies.		\| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] \|\| Matlab \|\| {{y}} \|\| {{n}} \|\| Designed for data sequences, as found in fMRI studies.

Jadrian Miles: /* See Also */

2009-07-02T02:39:59Z

Jadrian Miles at 16:06, 29 June 2009

2009-06-29T16:06:01Z

← Older revision		Revision as of 16:06, 29 June 2009
Line 16:		Line 16:
	\|-		\|-
	\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{n}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.		\| [http://www.cs.ucl.ac.uk/research/medic/camino/ Camino] \|\| Java \|\| {{y}} \|\| {{n}} \|\| No GUI. CLI for individual processing steps, connected by Unix pipes. Diverse collection of algorithmic alternatives.
	\|-
	~~\| [http://teem.sourceforge.net/ Teem] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| Gordon Kindlmann's library of raster filtering utilities, under active development.~~
	\|-		\|-
	\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}		\| [http://graphics.stanford.edu/projects/dti/software/ DTI-Query] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}}
Line 29:		Line 27:
	\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.		\| [http://surfer.nmr.mgh.harvard.edu/ Freesurfer] \|\| Lin, Mac \|\| {{n}} \|\| {{n}} \|\| GUI, plus CLI for individual processing steps.
	\|-		\|-
	\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Commercial license for all users.		\| [http://www.crsltd.com/catalog/brainvoyagerqx/index.html Brain Voyager] \|\| Lin, Win, Mac \|\| {{n}} \|\| {{n}} \|\| Yet another diffusion MRI GUI program. Commercial license for all users.
	\|-		\|-
	\| [http://~~www~~.~~fil~~.~~ion~~.~~ucl~~.ac.~~uk/spm/ SPM~~] \|\| ~~Matlab~~ \|\| {{y}} \|\| {{n}} \|\| ~~Designed~~ for ~~data sequences~~, ~~as found in fMRI studies~~.		\| [http://xmedcon.sourceforge.net/ XMedCon] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line converter for various medical imaging file formats.
			\|-
			\| [http://amide.sourceforge.net AMIDE] \|\| Lin, Win \|\| {{y}} \|\| {{n}} \|\| Graphical tool similar to FSL for viewing, registration, etc.
	\|-		\|-
	\| [http://~~xmedcon~~.~~sourceforge~~.~~net~~/ ~~XMedCon~~] \|\| Lin, Win \|\| {{y}} \|\| {{y}} \|\| Command-line ~~converter~~ for ~~various medical imaging file formats~~		\| [http://www.dclunie.com/dicom3tools.html DICOM3tools] \|\| Lin, Win, Mac \|\| {{y}} \|\| {{n}} \|\| Command-line tool for reading DICOM headers, written by a member of the DICOM standards committee.
	\|-		\|-
	\| [http://~~amide~~.~~sourceforge~~.~~net AMIDE~~] \|\| ~~Lin, Win~~ \|\| {{y}} \|\| {{n}} \|\| ~~Graphical tool similar to FSL~~ for ~~viewing, registration~~, ~~etc~~.		\| [http://www.fil.ion.ucl.ac.uk/spm/ SPM] \|\| Matlab \|\| {{y}} \|\| {{n}} \|\| Designed for data sequences, as found in fMRI studies.
	\|-		\|-
	\| [http://~~www~~.~~dclunie~~.~~com~~/~~dicom3tools.html DICOM3tools~~] \|\| Lin, ~~Win, OSX~~ \|\| {{y}} \|\| {{n}} \|\| ~~Command-line~~ tool for ~~reading DICOM headers, written by a member of the DICOM standards committee~~		\| [http://afni.nimh.nih.gov/afni AFNI] \|\| Lin, Mac \|\| {{y}} \|\| {{n}} \|\| A GUI tool like Slicer mainly designed for fMRI data.
	\|}		\|}

Jadrian Miles: /* See Also */

2009-02-09T17:49:24Z

← Older revision		Revision as of 02:39, 2 July 2009
Line 43:		Line 43:
	* [[3rd Party Visualization Software]], which includes toolkits whose functionality is a superset of diffusion MRI processing.		* [[3rd Party Visualization Software]], which includes toolkits whose functionality is a superset of diffusion MRI processing.
	* [http://www.nitrc.org/ <abbr title="Neuroimaging Informatics Tools and Resources Clearinghouse">NITRC</abbr>], the NIH's Sourceforge-like repository of neuroimaging software		* [http://www.nitrc.org/ <abbr title="Neuroimaging Informatics Tools and Resources Clearinghouse">NITRC</abbr>], the NIH's Sourceforge-like repository of neuroimaging software
			* [http://www.idoimaging.com IDoImaging.com], a database of freeware medical imaging programs and libraries

	[[Category:Diffusion MRI]][[Category:Software]]		[[Category:Diffusion MRI]][[Category:Software]]

← Older revision		Revision as of 17:49, 9 February 2009
Line 42:		Line 42:
	== See Also ==		== See Also ==
	* [[3rd Party Visualization Software]], which includes toolkits whose functionality is a superset of diffusion MRI processing.		* [[3rd Party Visualization Software]], which includes toolkits whose functionality is a superset of diffusion MRI processing.
			* [http://www.nitrc.org/ <abbr title="Neuroimaging Informatics Tools and Resources Clearinghouse">NITRC</abbr>], the NIH's Sourceforge-like repository of neuroimaging software

	[[Category:Diffusion MRI]][[Category:Software]]		[[Category:Diffusion MRI]][[Category:Software]]