<?xml version="1.0"?>
<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en">
	<id>http://vrl.cs.brown.edu/wiki/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Ryan+Cabeen</id>
	<title>VrlWiki - User contributions [en]</title>
	<link rel="self" type="application/atom+xml" href="http://vrl.cs.brown.edu/wiki/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Ryan+Cabeen"/>
	<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php/Special:Contributions/Ryan_Cabeen"/>
	<updated>2026-04-20T00:46:21Z</updated>
	<subtitle>User contributions</subtitle>
	<generator>MediaWiki 1.43.1</generator>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6885</id>
		<title>User:Ryan Cabeen</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6885"/>
		<updated>2016-11-28T20:45:31Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Software Tools */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;=Legacy Page=&lt;br /&gt;
&lt;br /&gt;
PhD Student from Fall 2010 - Spring 2016 and Postdoc Summer 2016.  Worked on computational tools for modeling, visualization, and analysis of brain anatomy from diffusion MRI datasets.  Below are pointers to various research artifacts.&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
&lt;br /&gt;
My publications can be found at the following pages:&lt;br /&gt;
* [http://vis.cs.brown.edu/organization/people/cabeen.html#PUBS Visweb]&lt;br /&gt;
* [https://www.ncbi.nlm.nih.gov/pubmed/?term=ryan+cabeen PubMed]&lt;br /&gt;
* [http://scholar.google.com/citations?user=R5Jr4-UAAAAJ Google Scholar]&lt;br /&gt;
&lt;br /&gt;
==Software Tools==&lt;br /&gt;
&lt;br /&gt;
Software can be checked out from a shared SVN repository with the following command:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;svn co --username vrluser --password goredsox https://www.brayns.com/tools/tag/LATEST tools&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The pipeline requires FSL, Freesurfer, and DTI-TK to be installed and available on the path.  These are available on the Brown CS filesystem, and the following can be added to your bash profile to set them up: &lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
# set up qit&lt;br /&gt;
export PATH=${PATH}:${WHERE_YOU_CHECKED_QIT_OUT}/tools/qit-install/bin&lt;br /&gt;
export GFXHOME=&amp;quot;/research/graphics/users/cabeen&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up Freesurfer &lt;br /&gt;
export FREESURFER_HOME=&amp;quot;${GFXHOME}/bin/freesurfer&amp;quot;&lt;br /&gt;
export PATH=${FREESURFER_HOME}/bin:${PATH}&lt;br /&gt;
&lt;br /&gt;
# set up FSL &lt;br /&gt;
export FSLDIR=&amp;quot;${GFXHOME}/bin/fsl/5.0&amp;quot;&lt;br /&gt;
export FSL_DATA_DIR=&amp;quot;${FSLDIR}/data&amp;quot;&lt;br /&gt;
source ${FSLDIR}/etc/fslconf/fsl.sh&lt;br /&gt;
export PATH=${FSLDIR}/bin:$PATH&lt;br /&gt;
export LD_LIBRARY_PATH=${FSLDIR}/bin${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}&lt;br /&gt;
&lt;br /&gt;
# set up DTI-TK&lt;br /&gt;
export DTITK_QSUB_QUEUE=&amp;quot;-V -l short&amp;quot;&lt;br /&gt;
export DTITK_USE_QSUB=1&lt;br /&gt;
export DTITK_ROOT=&amp;quot;${GFXHOME}/bin/dtitk-2.3.1-Linux-x86_64&amp;quot;&lt;br /&gt;
export PATH=&amp;quot;$PATH:$DTITK_ROOT/bin:$DTITK_ROOT/utilities:$DTITK_ROOT/scripts&amp;quot;&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
You can learn more about what&#039;s available by exploring the documentation included in the package.  The following script also provides a regression test to validate the pipeline on a regular basis:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/users/cabeen/testing/qregress.browncs.sh&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Files and Data==&lt;br /&gt;
&lt;br /&gt;
Posters and presentation slides can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common/talks/cabeen&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Grant-related documents can be found here&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
/map/gfx0/common0/documents/proposals/nih/bisti/irb/dtimri&lt;br /&gt;
/pro/graphics/proposals/nih/paul16smart2&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Source files for papers can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common0/documents/papers&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
MR imaging datasets and results can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/data/graphics/mri&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Contact==&lt;br /&gt;
&lt;br /&gt;
My permanent email is [mailto:cabeen@gmail.com cabeen@gmail.com]. Please feel free to contact me with any questions!&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6884</id>
		<title>User:Ryan Cabeen</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6884"/>
		<updated>2016-11-28T00:47:58Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;=Legacy Page=&lt;br /&gt;
&lt;br /&gt;
PhD Student from Fall 2010 - Spring 2016 and Postdoc Summer 2016.  Worked on computational tools for modeling, visualization, and analysis of brain anatomy from diffusion MRI datasets.  Below are pointers to various research artifacts.&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
&lt;br /&gt;
My publications can be found at the following pages:&lt;br /&gt;
* [http://vis.cs.brown.edu/organization/people/cabeen.html#PUBS Visweb]&lt;br /&gt;
* [https://www.ncbi.nlm.nih.gov/pubmed/?term=ryan+cabeen PubMed]&lt;br /&gt;
* [http://scholar.google.com/citations?user=R5Jr4-UAAAAJ Google Scholar]&lt;br /&gt;
&lt;br /&gt;
==Software Tools==&lt;br /&gt;
&lt;br /&gt;
Software can be checked out from a shared SVN repository with the following command:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;svn co --username vrluser --password goredsox https://www.brayns.com/tools/tag/LATEST tools&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The pipeline requires FSL, Freesurfer, and DTI-TK to be installed and available on the path.  These are available on the Brown CS filesystem, and the following can be added to your bash profile to set them up: &lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
# set up qit&lt;br /&gt;
export PATH=${PATH}:${WHERE_YOU_CHECKED_QIT_OUT}/tools/qit-install/bin&lt;br /&gt;
export GFXHOME=&amp;quot;/research/graphics/users/cabeen&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up Freesurfer &lt;br /&gt;
export FREESURFER_HOME=&amp;quot;${GFXHOME}/bin/freesurfer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up FSL &lt;br /&gt;
export FSLDIR=&amp;quot;${GFXHOME}/bin/fsl/5.0&amp;quot;&lt;br /&gt;
export FSL_DATA_DIR=&amp;quot;${FSLDIR}/data&amp;quot;&lt;br /&gt;
source ${FSLDIR}/etc/fslconf/fsl.sh&lt;br /&gt;
export PATH=${FSLDIR}/bin:$PATH&lt;br /&gt;
export LD_LIBRARY_PATH=${FSLDIR}/bin${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}&lt;br /&gt;
&lt;br /&gt;
# set up DTI-TK&lt;br /&gt;
export DTITK_QSUB_QUEUE=&amp;quot;-V -l short&amp;quot;&lt;br /&gt;
export DTITK_USE_QSUB=1&lt;br /&gt;
export DTITK_ROOT=&amp;quot;${GFXHOME}/bin/dtitk-2.3.1-Linux-x86_64&amp;quot;&lt;br /&gt;
export PATH=&amp;quot;$PATH:$DTITK_ROOT/bin:$DTITK_ROOT/utilities:$DTITK_ROOT/scripts&amp;quot;&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
You can learn more about what&#039;s available by exploring the documentation included in the package.  The following script also provides a regression test to validate the pipeline on a regular basis:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/users/cabeen/testing/qregress.browncs.sh&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Files and Data==&lt;br /&gt;
&lt;br /&gt;
Posters and presentation slides can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common/talks/cabeen&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Grant-related documents can be found here&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
/map/gfx0/common0/documents/proposals/nih/bisti/irb/dtimri&lt;br /&gt;
/pro/graphics/proposals/nih/paul16smart2&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Source files for papers can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common0/documents/papers&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
MR imaging datasets and results can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/data/graphics/mri&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Contact==&lt;br /&gt;
&lt;br /&gt;
My permanent email is [mailto:cabeen@gmail.com cabeen@gmail.com]. Please feel free to contact me with any questions!&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6871</id>
		<title>User:Ryan Cabeen</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6871"/>
		<updated>2016-08-24T01:41:05Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;=Legacy Page=&lt;br /&gt;
&lt;br /&gt;
PhD Student from Fall 2010 - Spring 2016 and Postdoc Summer 2016.  Worked on computational tools for modeling, visualization, and analysis of brain anatomy from diffusion MRI datasets.  Below are pointers to various research artifacts.&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
&lt;br /&gt;
My publications can be found at the following pages:&lt;br /&gt;
* [http://vis.cs.brown.edu/organization/people/cabeen.html#PUBS Visweb]&lt;br /&gt;
* [https://www.ncbi.nlm.nih.gov/pubmed/?term=ryan+cabeen PubMed]&lt;br /&gt;
* [http://scholar.google.com/citations?user=R5Jr4-UAAAAJ Google Scholar]&lt;br /&gt;
&lt;br /&gt;
==Software Tools==&lt;br /&gt;
&lt;br /&gt;
Software can be checked out from a shared SVN repository with the following command:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;svn co --username vrluser --password goredsox https://www.brayns.com/tools/tag/LATEST tools&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The pipeline requires FSL, Freesurfer, and DTI-TK to be installed and available on the path.  These are available on the Brown CS filesystem, and the following can be added to your bash profile to set them up: &lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
# set up qit&lt;br /&gt;
export PATH=${PATH}:${WHERE_YOU_CHECKED_QIT_OUT}/tools/qit-install/bin&lt;br /&gt;
export GFXHOME=&amp;quot;/research/graphics/users/cabeen&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up Freesurfer &lt;br /&gt;
export FREESURFER_HOME=&amp;quot;${GFXHOME}/bin/freesurfer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up FSL &lt;br /&gt;
export FSLDIR=&amp;quot;${GFXHOME}/bin/fsl/5.0&amp;quot;&lt;br /&gt;
export FSL_DATA_DIR=&amp;quot;${FSLDIR}/data&amp;quot;&lt;br /&gt;
source ${FSLDIR}/etc/fslconf/fsl.sh&lt;br /&gt;
export PATH=${FSLDIR}/bin:$PATH&lt;br /&gt;
export LD_LIBRARY_PATH=${FSLDIR}/bin${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}&lt;br /&gt;
&lt;br /&gt;
# set up DTI-TK&lt;br /&gt;
export DTITK_QSUB_QUEUE=&amp;quot;-V -l short&amp;quot;&lt;br /&gt;
export DTITK_USE_QSUB=1&lt;br /&gt;
export DTITK_ROOT=&amp;quot;${GFXHOME}/bin/dtitk-2.3.1-Linux-x86_64&amp;quot;&lt;br /&gt;
export PATH=&amp;quot;$PATH:$DTITK_ROOT/bin:$DTITK_ROOT/utilities:$DTITK_ROOT/scripts&amp;quot;&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
You can learn more about what&#039;s available by exploring the documentation included in the package.  The following script also provides a regression test to validate the pipeline on a regular basis:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/users/cabeen/testing/qregress.browncs.sh&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Files and Data==&lt;br /&gt;
&lt;br /&gt;
Posters and presentation slides can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common/talks/cabeen&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Grant-related documents can be found here&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
/map/gfx0/common0/documents/proposals/nih/bisti/irb/dtimri&lt;br /&gt;
/pro/graphics/proposals/nih/paul16smart2&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Source files for papers can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common0/documents/papers&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
MR imaging datasets and results can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/data/graphics/mri&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Contact==&lt;br /&gt;
&lt;br /&gt;
My permanent email is [mailto:cabeen@gmail.com cabeeen@gmail.com]. Please feel free to contact me with any questions!&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6870</id>
		<title>User:Ryan Cabeen</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=User:Ryan_Cabeen&amp;diff=6870"/>
		<updated>2016-08-23T20:17:50Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;=Legacy Page=&lt;br /&gt;
&lt;br /&gt;
PhD Student from Fall 2010 - Spring 2016 and Postdoc Summer 2016.  Worked on computational tools for modeling, visualization, and analysis of brain anatomy from diffusion MRI datasets.  Below are pointers to various research artifacts.&lt;br /&gt;
&lt;br /&gt;
==Publications==&lt;br /&gt;
&lt;br /&gt;
My publications can be found at the following pages:&lt;br /&gt;
* [http://vis.cs.brown.edu/organization/people/cabeen.html#PUBS Visweb]&lt;br /&gt;
* [https://www.ncbi.nlm.nih.gov/pubmed/?term=ryan+cabeen PubMed]&lt;br /&gt;
* [http://scholar.google.com/citations?user=R5Jr4-UAAAAJ Google Scholar]&lt;br /&gt;
&lt;br /&gt;
==Software Tools==&lt;br /&gt;
&lt;br /&gt;
Software can be checked out from a shared SVN repository with the following command:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;svn co --username vrluser --password goredsox https://www.brayns.com/tools/tag/LATEST tools&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
The pipeline requires FSL, Freesurfer, and DTI-TK to be installed and available on the path.  These are available on the Brown CS filesystem, and the following can be added to your bash profile to set them up: &lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
# set up qit&lt;br /&gt;
export PATH=${PATH}:${WHERE_YOU_CHECKED_QIT_OUT}/tools/qit-install/bin&lt;br /&gt;
export GFXHOME=&amp;quot;/research/graphics/users/cabeen&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up Freesurfer &lt;br /&gt;
export FREESURFER_HOME=&amp;quot;${GFXHOME}/bin/freesurfer&amp;quot;&lt;br /&gt;
&lt;br /&gt;
# set up FSL &lt;br /&gt;
export FSLDIR=&amp;quot;${GFXHOME}/bin/fsl/5.0&amp;quot;&lt;br /&gt;
export FSL_DATA_DIR=&amp;quot;${FSLDIR}/data&amp;quot;&lt;br /&gt;
source ${FSLDIR}/etc/fslconf/fsl.sh&lt;br /&gt;
export PATH=${FSLDIR}/bin:$PATH&lt;br /&gt;
export LD_LIBRARY_PATH=${FSLDIR}/bin${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}&lt;br /&gt;
&lt;br /&gt;
# DTI-TK&lt;br /&gt;
export DTITK_QSUB_QUEUE=&amp;quot;-V -l short&amp;quot;&lt;br /&gt;
export DTITK_USE_QSUB=1&lt;br /&gt;
export DTITK_ROOT=&amp;quot;${GFXHOME}/bin/dtitk-2.3.1-Linux-x86_64&amp;quot;&lt;br /&gt;
export PATH=&amp;quot;$PATH:$DTITK_ROOT/bin:$DTITK_ROOT/utilities:$DTITK_ROOT/scripts&amp;quot;&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
You can learn more about what&#039;s available by exploring the documentation included in the package.  The following script also provides a regression test to validate the pipeline on a regular basis:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/users/cabeen/testing/qregress.browncs.sh&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Files and Data==&lt;br /&gt;
&lt;br /&gt;
Posters and presentation slides can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common/talks/cabeen&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Grant-related documents can be found here&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
/map/gfx0/common0/documents/proposals/nih/bisti/irb/dtimri&lt;br /&gt;
/pro/graphics/proposals/nih/paul16smart2&lt;br /&gt;
&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Source files for papers can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/research/graphics/common0/documents/papers&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
MRI imaging datasets can be found here:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;/data/graphics/mri&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Contact==&lt;br /&gt;
&lt;br /&gt;
My permanent email is [mailto:cabeen@gmail.com cabeeen@gmail.com]. Please feel free to contact me with any questions!&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6832</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6832"/>
		<updated>2016-06-01T17:25:17Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Ryan */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;16) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Writing&#039;&#039;&#039; =====&lt;br /&gt;
* &amp;lt;s&amp;gt;By January 29: Create exemplar VIS/HCI technical writing exemplar spreadsheet with Hua&amp;lt;/s&amp;gt;&lt;br /&gt;
* Shift writing style to be story- and outline-driven&lt;br /&gt;
* Practice writing in short, daily sessions&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Dissertation&#039;&#039;&#039; =====&lt;br /&gt;
* &amp;lt;s&amp;gt;23 February: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Dissertation proposal&amp;lt;/span&amp;gt;&#039;&#039;&#039;&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;29 April: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Resubmit dissertation proposal&amp;lt;/span&amp;gt;&#039;&#039;&#039;&amp;lt;/s&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color&#039;&#039;&#039; =====&lt;br /&gt;
* &amp;lt;s&amp;gt;By 15 January: Complete achromatic color preference extrapolation&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 29 January: Complete pilot rounds of Experimentr data collection and iron out all bugs (remember to make security patches)&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 5 February: Complete all data collection&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 29 February: Complete 1st draft of Colorgorical paper&amp;lt;/s&amp;gt; (done 23 Feb)&lt;br /&gt;
* &amp;lt;s&amp;gt;By 21 March: submit abstract to VIS (InfoVis)&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 31 March: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Resubmit paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039;&amp;lt;/s&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics Case Study&#039;&#039;&#039; =====&lt;br /&gt;
* Weekly: check up on MAGI interaction log scraping&lt;br /&gt;
* &amp;lt;s&amp;gt;By 21 March: submit abstract to VIS (VAST)&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 31 March: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;(re)submit latest draft to VAST&amp;lt;/span&amp;gt;&#039;&#039;&#039;&amp;lt;/s&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;BLADE&#039;&#039;&#039; =====&lt;br /&gt;
* &amp;lt;s&amp;gt;By 4 March: Have all genomics researchers scheduled for observation&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;By 1 April: Have sigma-lognormal interaction log mining implemented&amp;lt;/s&amp;gt;&lt;br /&gt;
* By 30 April: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Complete BLADE-video comparative evaluation&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 30 April: Complete BLADE prototype&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &amp;lt;s&amp;gt;Complete Sheridan Certificate I program&amp;lt;/s&amp;gt;&lt;br /&gt;
* Help Karen prep heatmap color paper for submission&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
* &amp;lt;s&amp;gt;ThoughtFlow submission to VIS&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;Jan. 22: First round user feedback collected and design improvement plan finalized&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;Feb.25: Design improvements implemented based on first round user feedback&amp;lt;/s&amp;gt;&lt;br /&gt;
*** &amp;lt;s&amp;gt;Paper thumbnails and citation pattern vis prototyped (Feb.15)&amp;lt;/s&amp;gt;&lt;br /&gt;
*** Proposal keyword selection implemented (Feb.22)&amp;lt;/s&amp;gt;&lt;br /&gt;
*** &amp;lt;s&amp;gt;Citation pattern backend implemented (Feb.22)&amp;lt;/s&amp;gt;&lt;br /&gt;
*** &amp;lt;s&amp;gt;Citation pattern vis and paper thumbnails design refined (Feb.29)&amp;lt;/s&amp;gt;&lt;br /&gt;
*** &amp;lt;s&amp;gt;Get feedback from Steven S&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;March 7: Second round user feedback collected&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;March 21: abstract due&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;March 31: paper submission&amp;lt;/s&amp;gt;&lt;br /&gt;
* &amp;lt;s&amp;gt;Flyingsessions submission to VIS&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;March 21: abstract due&amp;lt;/s&amp;gt;&lt;br /&gt;
** &amp;lt;s&amp;gt;March 31: paper submission&amp;lt;/s&amp;gt;&lt;br /&gt;
* ThoughtFlow post-VIS work&lt;br /&gt;
** Interface redesign&lt;br /&gt;
*** Write a plan on how it ties into interaction modeling work (Apr.8)&lt;br /&gt;
*** Sketch out the design for literature exploration view (Apr.15)&lt;br /&gt;
*** Implement literature exploration view&lt;br /&gt;
** Interaction modeling&lt;br /&gt;
* Dissertation Writing&lt;br /&gt;
** Draft abstract and introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* Grants&lt;br /&gt;
** Renewals&lt;br /&gt;
*** SMART2 - July 5?&lt;br /&gt;
*** SA/AIDS - Sept 14&lt;br /&gt;
** Career dev&lt;br /&gt;
*** NIH: F32, K99/R00, etc?&lt;br /&gt;
* Papers&lt;br /&gt;
** Tractography eval&lt;br /&gt;
*** multi vs single&lt;br /&gt;
*** bundle selection mechanisms&lt;br /&gt;
** Diffusion model eval&lt;br /&gt;
*** relate parameters of more complex models to tensors&lt;br /&gt;
*** atlasing with multiple diffusion models&lt;br /&gt;
** Collabs&lt;br /&gt;
*** Bipolar imaging with Dan&lt;br /&gt;
*** Something with Ani?&lt;br /&gt;
*** Ongoing work with RP group&lt;br /&gt;
* Training&lt;br /&gt;
** Test suite and shared repo of brain tools&lt;br /&gt;
** Clean interface for novice users&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] (for sabbatical) ===&lt;br /&gt;
&lt;br /&gt;
* yurt&lt;br /&gt;
** color calibrated within a few JND&#039;s by end of June&lt;br /&gt;
** seams calibrated within a few mm&#039;s by end of June&lt;br /&gt;
** application(s) (re)submitted for some fidelity-based research&lt;br /&gt;
** application(s) submitted for some collaboration-based research, perhaps with Gatesy/Francois/Josh/Johannes&lt;br /&gt;
** wiki &amp;quot;how to&amp;quot; for creating a yurt app, perhaps w/Johannes, before cs237 for sure!&lt;br /&gt;
** scientific VR software tools review document by end of summer, from developer to non-programming user&lt;br /&gt;
** paper out about R&amp;amp;D, model on Cruz, by end of sumer&lt;br /&gt;
* VT&lt;br /&gt;
** seam experiment&lt;br /&gt;
** submit TTTS manuscript&lt;br /&gt;
* orthopedics&lt;br /&gt;
** tools continuing to run well (despite upgrade)&lt;br /&gt;
*** get registration pipeline to pass regression tests&lt;br /&gt;
** maybe pursue diffusion imaging in joints&lt;br /&gt;
* diffusion MRI&lt;br /&gt;
** two renewal grants with Rob Paul and Ryan over summer and fall&lt;br /&gt;
*** Sept 14, SA/AIDS&lt;br /&gt;
*** sooner, SMART/Aging&lt;br /&gt;
** Dickstein paper and maybe proposal&lt;br /&gt;
** tractography comparison paper with Ryan during summer&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
** prepare for incoming triplet: brains, hands, yurt&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
* CAVE/YURT&lt;br /&gt;
** Complete or nearly complete user study with Johannes&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
** Add new applications for use in YURT&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
* Third Person Perspective&lt;br /&gt;
** Make plans for future of 3PP project or something derivative&lt;br /&gt;
&lt;br /&gt;
* Hospital&lt;br /&gt;
** Discuss potential projects with Derek&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Complete user study with Wesley&lt;br /&gt;
** Design next experiment for VT project&lt;br /&gt;
** Work on VR volume visualization (3D Visualizer/CaveVOX/...)&lt;br /&gt;
** Get more concrete collaboration with students of Robbert Creton or Kristi Wharton&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
** Explore use of VTK in VRG3D&lt;br /&gt;
&lt;br /&gt;
* CS137&lt;br /&gt;
** Set up clean development branch for CavePainting&lt;br /&gt;
** Get acquainted with the sourcecode&lt;br /&gt;
** Fix some bugs if possible&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
* Thesis Project &lt;br /&gt;
** Restart discussions with Derek and Kristi&lt;br /&gt;
** Explore collaborations for genome folding visualizations&lt;br /&gt;
** by December: Create Thesis proposal draft&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Bruce Campbell|Bruce]] ===&lt;br /&gt;
&lt;br /&gt;
* Funding&lt;br /&gt;
** Raise funding to support Visiting Scientist position for 2016&lt;br /&gt;
** Submit proposals to STAC, NSF ITEST, and ONR by end of 2015&lt;br /&gt;
** Create ten-page white paper for Jan 31, 2016 to send to other funding organizations&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Axial Seamount application:&lt;br /&gt;
*** Implement Animation controls by Dec 31, 2015&lt;br /&gt;
*** Implement Grab and Manipulate interaction by Jan 30, 2016&lt;br /&gt;
** Create Plan for 2016 work by Jan 30, 2016 (promote here):&lt;br /&gt;
*** Continuous overall contribution: Useful Temporal Interaction GUIs&lt;br /&gt;
*** Prioritize other COVE (http://cove.ocean.washington.edu) features integration&lt;br /&gt;
*** Pursue Python interpreter integration unless other Yurt methods pan out&lt;br /&gt;
*** Anticipate STAC/ITEST programming needs for Yurt&lt;br /&gt;
*** Continue to pursue possible student participation&lt;br /&gt;
&lt;br /&gt;
* CS 137&lt;br /&gt;
** Continue to attend and revisit notes from UW INDE 543&lt;br /&gt;
** CG&amp;amp;A &#039;&#039;Art on Graphics&#039;&#039; column to layout by February 15, 2016&lt;br /&gt;
&lt;br /&gt;
* Distributed Cognition&lt;br /&gt;
** Create updated mind map (with bibliography) by Dec 31, 2015&lt;br /&gt;
** Create d-cog metric and test plan to support VIS/VAST paper by Jan 15, 2015&lt;br /&gt;
** VIS/VAST paper abstract ready by March deadline&lt;br /&gt;
&lt;br /&gt;
* Personal Development&lt;br /&gt;
** Continuous: Improve research process effectiveness including a better parallel writing process&lt;br /&gt;
** Continuous: Improve conciseness in e-mail and research-related writing&lt;br /&gt;
** Continuous: Improve at sketching ideas&lt;br /&gt;
&lt;br /&gt;
=== [[User:Josh Tveite|Josh]] ===&lt;br /&gt;
&lt;br /&gt;
* Research Comps&lt;br /&gt;
** Finish proposal and give proposal presentation&lt;br /&gt;
** Continue work on implementation&lt;br /&gt;
** Communicate better with Steve&lt;br /&gt;
&lt;br /&gt;
* Summer Project&lt;br /&gt;
** Determine what to work on as continuing from VT work&lt;br /&gt;
** Do said work (To be expanded on soon)&lt;br /&gt;
&lt;br /&gt;
* General Yurt&lt;br /&gt;
** Continue to give demos as needed&lt;br /&gt;
** Continue to improve knowledge of working in/with the Yurt&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wallace Lages|Wallace]] ===&lt;br /&gt;
&lt;br /&gt;
*Finish experiment and write IEEEVR paper&lt;br /&gt;
&lt;br /&gt;
* Finish VR volume renderer&lt;br /&gt;
** last changes: added another kernel for gpu pre processing, copying one PBO to another in the GPU. Simple kernel (just remove part of the dataset)&lt;br /&gt;
** Issues: Interaction pass takes a long time on CPU&lt;br /&gt;
** Options: add spatial structure, perform interaction on GPU&lt;br /&gt;
** Other improvements: 1) reduce original RGBA 3d texture to mono -&amp;gt; improve memory usage 2) remove 3d texture altogether and implement filtering in the shader -&amp;gt; possible faster copy in one pass, 3) change to splatting 4) refactor code&lt;br /&gt;
&lt;br /&gt;
*Reimplement Volume Cracker like interaction&lt;br /&gt;
**Implement on VR&lt;br /&gt;
**Develop hardware&lt;br /&gt;
&lt;br /&gt;
* Finish new interaction technique&lt;br /&gt;
**Finish design&lt;br /&gt;
**Implement software&lt;br /&gt;
**Implement technique on VR&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2016|Spring &#039;16]]&lt;br /&gt;
* [[/Fall 2015|Fall &#039;15]]&lt;br /&gt;
* [[/Summer 2015|Summer &#039;15]]&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6685</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6685"/>
		<updated>2015-06-21T20:02:01Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Dissertation&#039;&#039;&#039; =====&lt;br /&gt;
* By June 5: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;send out complete first draft to dissertation committee&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;schedule proposal date&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics&#039;&#039;&#039; =====&lt;br /&gt;
* Weekly: check up on MAGI interaction logs and process them through BLADE to verify collection is going smoothly&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: complete MAGI view redesign and accompanying logging refactor&lt;br /&gt;
* By June 30: create local MAGI annotation development sandbox for ETA development&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;create stand-alone ETA prototype that displays querryable network with annotation overlay&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: draft a high-level ETA contribution document to ID ultimate project direction (e.g., drop topic modeling)&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color&#039;&#039;&#039; =====&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: prototype D3 decomposition-by-category feature of Colorgorical&lt;br /&gt;
* By July 10: prototype new Colorgorical scoring functions using Bayesian optimization procedure&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;complete integration of new scoring functions into Colorgorical&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;integrate visualization decomposition prototype as a palette preview feature&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Cut back on non-dissertation projects to 0% commitment by end of summer&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* RP Imaging Studies&lt;br /&gt;
** Send update for request for additional bundles in SMART data&lt;br /&gt;
** Iron out details for South Africa analysis (group meeting on 6/10)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: fiber bundle length (need a couple more bundles)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: graph-based analysis w/ Laurie&lt;br /&gt;
** Keep up with paper reviewing and other requests&lt;br /&gt;
* Diffusion outside brain&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: support image analysis w/ Trey Crisco &amp;amp; Ed Walsh&lt;br /&gt;
* Yurt&lt;br /&gt;
** Demo as needed&lt;br /&gt;
** Provide support for CS137-related things&lt;br /&gt;
** Help Johannes with getting up to speed for TAing&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: Get some brain data in&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Complete a rough draft of dissertation&lt;br /&gt;
** Work with Dan to get bipolar imaging paper out&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: Put together documentation of various analyses and tools&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
* CAVE/YURT&lt;br /&gt;
** Complete or nearly complete user study with Johannes&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
** Add new applications for use in YURT&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
* Third Person Perspective&lt;br /&gt;
** Make plans for future of 3PP project or something derivative&lt;br /&gt;
&lt;br /&gt;
* Hospital&lt;br /&gt;
** Discuss potential projects with Derek&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Complete user study with Wesley&lt;br /&gt;
** Work on VR volume visualization (3D Visualizer/CaveVOX/...)&lt;br /&gt;
** Get more concrete collaboration with students of Robbert Creton or Kristi Wharton&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
&lt;br /&gt;
* CS137&lt;br /&gt;
** Set up clean development branch for CavePainting&lt;br /&gt;
** Get acquainted with the sourcecode&lt;br /&gt;
** Fix some bugs if possible&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6684</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6684"/>
		<updated>2015-06-21T20:01:43Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Dissertation&#039;&#039;&#039; =====&lt;br /&gt;
* By June 5: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;send out complete first draft to dissertation committee&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;schedule proposal date&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics&#039;&#039;&#039; =====&lt;br /&gt;
* Weekly: check up on MAGI interaction logs and process them through BLADE to verify collection is going smoothly&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: complete MAGI view redesign and accompanying logging refactor&lt;br /&gt;
* By June 30: create local MAGI annotation development sandbox for ETA development&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;create stand-alone ETA prototype that displays querryable network with annotation overlay&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: draft a high-level ETA contribution document to ID ultimate project direction (e.g., drop topic modeling)&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color&#039;&#039;&#039; =====&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: prototype D3 decomposition-by-category feature of Colorgorical&lt;br /&gt;
* By July 10: prototype new Colorgorical scoring functions using Bayesian optimization procedure&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;complete integration of new scoring functions into Colorgorical&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;integrate visualization decomposition prototype as a palette preview feature&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Cut back on non-dissertation projects to 0% commitment by end of summer&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* RP Imaging Studies&lt;br /&gt;
** Send update for request for additional bundles in SMART data&lt;br /&gt;
** Iron out details for South Africa analysis (group meeting on 6/10)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: fiber bundle length (need a couple more bundles)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: graph-based analysis w/ Laurie&lt;br /&gt;
** Keep up with paper reviewing and other requests&lt;br /&gt;
* Diffusion outside brain&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: support image analysis w/ Trey Crisco &amp;amp; Ed Walsh&lt;br /&gt;
* Yurt&lt;br /&gt;
** Demo as needed&lt;br /&gt;
** Provide support for CS137-related things&lt;br /&gt;
** Help Johannes with getting up to speed for TAing&lt;br /&gt;
** Get some brain data in&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Complete a rough draft of dissertation&lt;br /&gt;
** Work with Dan to get bipolar imaging paper out&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: Put together documentation of various analyses and tools&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
* CAVE/YURT&lt;br /&gt;
** Complete or nearly complete user study with Johannes&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
** Add new applications for use in YURT&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
* Third Person Perspective&lt;br /&gt;
** Make plans for future of 3PP project or something derivative&lt;br /&gt;
&lt;br /&gt;
* Hospital&lt;br /&gt;
** Discuss potential projects with Derek&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Complete user study with Wesley&lt;br /&gt;
** Work on VR volume visualization (3D Visualizer/CaveVOX/...)&lt;br /&gt;
** Get more concrete collaboration with students of Robbert Creton or Kristi Wharton&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
&lt;br /&gt;
* CS137&lt;br /&gt;
** Set up clean development branch for CavePainting&lt;br /&gt;
** Get acquainted with the sourcecode&lt;br /&gt;
** Fix some bugs if possible&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6659</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6659"/>
		<updated>2015-06-15T03:27:21Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Dissertation&#039;&#039;&#039; =====&lt;br /&gt;
* By June 5: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;send out complete first draft to dissertation committee&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;schedule proposal date&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics&#039;&#039;&#039; =====&lt;br /&gt;
* Weekly: check up on MAGI interaction logs and process them through BLADE to verify collection is going smoothly&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: complete MAGI view redesign and accompanying logging refactor&lt;br /&gt;
* By June 30: create local MAGI annotation development sandbox for ETA development&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;create stand-alone ETA prototype that displays querryable network with annotation overlay&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: draft a high-level ETA contribution document to ID ultimate project direction (e.g., drop topic modeling)&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color&#039;&#039;&#039; =====&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: prototype D3 decomposition-by-category feature of Colorgorical&lt;br /&gt;
* By July 10: prototype new Colorgorical scoring functions using Bayesian optimization procedure&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;complete integration of new scoring functions into Colorgorical&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;integrate visualization decomposition prototype as a palette preview feature&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Cut back on non-dissertation projects to 0% commitment by end of summer&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* RP Imaging Studies&lt;br /&gt;
** Send update for request for additional bundles in SMART data&lt;br /&gt;
** Iron out details for South Africa analysis (group meeting on 6/10)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: fiber bundle length (need a couple more bundles)&lt;br /&gt;
*** &#039;&#039;Update&#039;&#039;: graph-based analysis w/ Laurie&lt;br /&gt;
** Keep up with paper reviewing and other requests&lt;br /&gt;
* Diffusion outside brain&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: support image analysis w/ Trey Crisco &amp;amp; Ed Walsh&lt;br /&gt;
* Yurt&lt;br /&gt;
** Demo as needed&lt;br /&gt;
** Provide support for CS137-related things&lt;br /&gt;
** Help Johannes with getting up to speed for TAing&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Complete a rough draft of dissertation&lt;br /&gt;
** Work with Dan to get bipolar imaging paper out&lt;br /&gt;
** &#039;&#039;Update&#039;&#039;: Put together documentation of various analyses and tools&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Complete user study with Wesley&lt;br /&gt;
** Work on VR volume visualization (3D Visualizer/CaveVOX/...)&lt;br /&gt;
** Get more concrete collaboration with students of Robbert Creton or Kristi Wharton&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
&lt;br /&gt;
* CS137&lt;br /&gt;
** Set up clean development branch for CavePainting&lt;br /&gt;
** Get acquainted with the sourcecode&lt;br /&gt;
** Fix some bugs if possible&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6658</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6658"/>
		<updated>2015-06-15T03:26:13Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Dissertation&#039;&#039;&#039; =====&lt;br /&gt;
* By June 5: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;send out complete first draft to dissertation committee&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;schedule proposal date&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics&#039;&#039;&#039; =====&lt;br /&gt;
* Weekly: check up on MAGI interaction logs and process them through BLADE to verify collection is going smoothly&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: complete MAGI view redesign and accompanying logging refactor&lt;br /&gt;
* By June 30: create local MAGI annotation development sandbox for ETA development&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;create stand-alone ETA prototype that displays querryable network with annotation overlay&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: draft a high-level ETA contribution document to ID ultimate project direction (e.g., drop topic modeling)&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color&#039;&#039;&#039; =====&lt;br /&gt;
* By June 26: respond to VIS review feedback&lt;br /&gt;
* By June 30: prototype D3 decomposition-by-category feature of Colorgorical&lt;br /&gt;
* By July 10: prototype new Colorgorical scoring functions using Bayesian optimization procedure&lt;br /&gt;
* By August 7: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;complete integration of new scoring functions into Colorgorical&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By September 4: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;integrate visualization decomposition prototype as a palette preview feature&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Cut back on non-dissertation projects to 0% commitment by end of summer&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* RP Imaging Studies&lt;br /&gt;
** Send update for request for additional bundles in SMART data&lt;br /&gt;
** Iron out details for South Africa analysis (group meeting on 6/10)&lt;br /&gt;
*** Update: fiber bundle length (need a couple more bundles)&lt;br /&gt;
*** Update: graph-based analysis w/ Laurie&lt;br /&gt;
** Keep up with paper reviewing and other requests&lt;br /&gt;
* Diffusion outside brain&lt;br /&gt;
** Update: support image analysis w/ Trey Crisco &amp;amp; Ed Walsh&lt;br /&gt;
* Yurt&lt;br /&gt;
** Demo as needed&lt;br /&gt;
** Provide support for CS137-related things&lt;br /&gt;
** Help Johannes with getting up to speed for TAing&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Complete a rough draft of dissertation&lt;br /&gt;
** Work with Dan to get bipolar imaging paper out&lt;br /&gt;
** Update: Put together documentation of various analyses and tools&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* Cave/Yurt&lt;br /&gt;
** Complete user study with Wesley&lt;br /&gt;
** Work on VR volume visualization (3D Visualizer/CaveVOX/...)&lt;br /&gt;
** Get more concrete collaboration with students of Robbert Creton or Kristi Wharton&lt;br /&gt;
** Help out with Demos when needed&lt;br /&gt;
&lt;br /&gt;
* CS137&lt;br /&gt;
** Set up clean development branch for CavePainting&lt;br /&gt;
** Get acquainted with the sourcecode&lt;br /&gt;
** Fix some bugs if possible&lt;br /&gt;
&lt;br /&gt;
* Fitts&#039; Law&lt;br /&gt;
** Work on paper with HCI seminar group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6655</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6655"/>
		<updated>2015-06-01T16:25:59Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* RP Imaging Studies&lt;br /&gt;
** Send update for request for additional bundles in SMART data&lt;br /&gt;
** Iron out details for South Africa analysis (group meeting on 6/10)&lt;br /&gt;
** Keep up with paper reviewing and other requests&lt;br /&gt;
* Yurt&lt;br /&gt;
** Demo as needed&lt;br /&gt;
** Provide support for CS137-related things&lt;br /&gt;
** Help Johannes with getting up to speed for TAing&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Complete a rough draft of dissertation&lt;br /&gt;
** Work with Dan to get bipolar imaging paper out&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6654</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6654"/>
		<updated>2015-06-01T16:06:32Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6653</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6653"/>
		<updated>2015-06-01T16:05:18Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics VIS Project&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** change abstract to be more of a paper abstract and less of a book abstract&lt;br /&gt;
** make paper skeleton with clear evaluation plans, methods, and expected results&lt;br /&gt;
** determine if making the GD3 Notebook as a third tool is manageable given pre-VIS workload&lt;br /&gt;
* By 1/19: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Complete and freeze GD3 v1 visualization library development&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
** Don&#039;t do more than bringing refactored library up to existing capabilities.&lt;br /&gt;
* By 1/19: E-mail and recruit &amp;gt;=5 experts for each tool that is being evaluated&lt;br /&gt;
* By 2/2: Have all experts scheduled and have the evaluations set in stone and methods/procedure written into paper draft&lt;br /&gt;
* By 2/20: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Have all evaluation completed and coded&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 3/9: E-mail David a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Send out revised draft to all authors&lt;br /&gt;
* By 3/21: Submit abstract to VIS and have a paper draft that is submittable&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit genomics viz paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color palette picker&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** Brainstorm a list of possible evaluations with total &amp;gt;= 5 possible evaluations&lt;br /&gt;
** Send an abstract to Karen and David and a one-paragraph description of the evaluation plan&lt;br /&gt;
** Write paper skeleton&lt;br /&gt;
* By 1/19: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Finish tool&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 1/26: Have a meeting/demo with David and Karen to get feedback on evaluation&lt;br /&gt;
* By 1/26: Run pilot MTurk evaluations on discerinability and preference&lt;br /&gt;
* By 2/9: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Have complete data from MTurk discernability and preference evaluations&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 3/2: E-Mail David and Karen a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Have a submittable draft ready&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit color palette paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Continuous Colormaps&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/26: Meet with David and Karen about project (joint with color palette modeling)&lt;br /&gt;
* By 1/26: Freeze data collection&lt;br /&gt;
* By 2/19: Have a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit color map paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
** Deferred&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Post-VIS Goals to 15 May (semester end)&#039;&#039;&#039; =====&lt;br /&gt;
* By 4/20: Have statistics wrapped up for color modeling project&lt;br /&gt;
* By 4/20: Write lessons learned document from the two VIS submissions&lt;br /&gt;
* By 5/11: Have a written outline of a proposal organization&lt;br /&gt;
* By 5/11: Post summer goal list&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;E-mail updates more than you think you need to (i.e., weekly updates)&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Sign up for Sheridan Center&#039;s teaching certification for Fall 2015 semester&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
** Deadline and form activation is in July&lt;br /&gt;
* Work on the outcome of the MAGI submission to Nature Methods &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
* Practice fast writing&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Send proposal to committee members by &#039;&#039;&#039;1/21&#039;&#039;&#039; [done]&lt;br /&gt;
** Revised the document to address Jeff&#039;s feedback by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
*** Finish the interaction dimension based on literature review by &#039;&#039;&#039;1/27&#039;&#039;&#039;&lt;br /&gt;
*** Incorporate Pearl&#039;s work on causation into analysis methods if appropriate by &#039;&#039;&#039;2/2&#039;&#039;&#039;&lt;br /&gt;
*** Revise the methods section to merge two studies by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
** Revised the document to address Steven&#039;s feedback by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
** Schedule a date by &#039;&#039;&#039;2/15&#039;&#039;&#039;&lt;br /&gt;
** Give the proposal talk by &#039;&#039;&#039;3/31&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Interaction history analysis paper&lt;br /&gt;
** Finish preliminary analysis with Markov chain and action / component frequency features by &#039;&#039;&#039;1/31&#039;&#039;&#039;&lt;br /&gt;
** First paper draft done and ask for Caroline&#039;s feedback by &#039;&#039;&#039;2/21&#039;&#039;&#039;&lt;br /&gt;
** Submit abstract by &#039;&#039;&#039;3/21&#039;&#039;&#039;&lt;br /&gt;
** Submit to VIS by &#039;&#039;&#039;3/31&#039;&#039;&#039;&lt;br /&gt;
** Give a Scivis talk on &#039;&#039;&#039;4/14&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Interface redesign sketched out by &#039;&#039;&#039;2/28&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Edge uncertainty paper&lt;br /&gt;
** Address reviewer comments after receiving feedback&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Have a good job lined up for the fall          &amp;amp;#10003;&lt;br /&gt;
** Keep list of jobs/postdoc opportunities up-to-date          &amp;amp;#10003;&lt;br /&gt;
** Send out applications          &amp;amp;#10003;&lt;br /&gt;
** Research statement by &#039;&#039;&#039;end of January&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Do a practice job talk by &#039;&#039;&#039;end of January&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Do a good interview at MIT/LL on &#039;&#039;&#039;Feb 12/13&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
* Finish project about integrating automatic evaluations with git&lt;br /&gt;
** Clean up MTurk scripts to link into git hook by end of January          &amp;amp;#10003;&lt;br /&gt;
** Run case study on alternative vis designs from our VAST 2014 paper by &#039;&#039;&#039;&amp;lt;s&amp;gt;end of Feb&amp;lt;/s&amp;gt; mid March&#039;&#039;&#039;&lt;br /&gt;
** Submit VIS paper by &#039;&#039;&#039;end of March&#039;&#039;&#039;&lt;br /&gt;
* Resubmit TVCG Fauxvea paper with major revision&lt;br /&gt;
** Plan for revisions by &#039;&#039;&#039;3/2&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Deadline for major revision is &#039;&#039;&#039;May 26&#039;&#039;&#039;&lt;br /&gt;
* Dissertation&lt;br /&gt;
** Tex with outline in private GitHub repo by &#039;&#039;&#039;10/1&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Follow chapter schedule in my [[Media:DCP_steveg_sanitized.pdf|Brown GS 6th-year proposal (DCP)]]&lt;br /&gt;
*** By &#039;&#039;&#039;3/31&#039;&#039;&#039;, draft Chapter 6: Crowdsourced Evaluation Framework (from new experiment)&lt;br /&gt;
*** By &#039;&#039;&#039;3/9&#039;&#039;&#039;, outline Chapter 7: Conclusions&lt;br /&gt;
*** By &#039;&#039;&#039;3/16&#039;&#039;&#039;, outline Chapter 1: Introduction&lt;br /&gt;
*** By &#039;&#039;&#039;3/23&#039;&#039;&#039;, outline Chapter 2: Background          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;end of April&#039;&#039;&#039;, draft of full document done and circulated to committee&lt;br /&gt;
*** Run through the [http://cs.brown.edu/degrees/doctoral/proposal/Thesis_Proposal_Checklist.pdf thesis checklist]&lt;br /&gt;
*** By &#039;&#039;&#039;August&#039;&#039;&#039;, defense!&lt;br /&gt;
* Misc&lt;br /&gt;
** Help David and Hua successfully submit NSF grant, deadline on &#039;&#039;&#039;1/12&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Due my reviews/coordinating as a CHI Works-in-progress PC member, wrapped up by &#039;&#039;&#039;1/29&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Check up on TVCG paper submitted last semester: any revisions needed?          &amp;amp;#10003;&lt;br /&gt;
** Make at least one of my private github repos into a public one          &amp;amp;#10003;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* South Africa &lt;br /&gt;
** results created and shared&lt;br /&gt;
** include multi-fiber methods&lt;br /&gt;
* Dan pediatric bipolar&lt;br /&gt;
** complete paper writing&lt;br /&gt;
** include region segmentation methods&lt;br /&gt;
** consider potential additional pubs&lt;br /&gt;
* Edinburgh&lt;br /&gt;
** make data resource paper&lt;br /&gt;
** option: multi-fiber atlas?&lt;br /&gt;
** option: reproducing aging studies, e.g. STL FBL&lt;br /&gt;
* Multi-fiber estimation &lt;br /&gt;
** put on finishing touches on journal paper and submit&lt;br /&gt;
* Thesis writing&lt;br /&gt;
** make some progress on introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* cave running and with demos and working for may opening&lt;br /&gt;
** cavePainting, advisor, cs137 examples, VT project&lt;br /&gt;
** hw and low-level software testing/reliability plan&lt;br /&gt;
** application software development easier&lt;br /&gt;
* longer-term funding progress&lt;br /&gt;
** some specific targets for proposals: cave, cognition, expedition, brains&lt;br /&gt;
* full Bowman experiment run by Wesley and/or Johannes in Yurt&lt;br /&gt;
* good CS16&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Coursework&#039;&#039;&#039;&lt;br /&gt;
* HCI Seminar&lt;br /&gt;
* Introduction to Data Science&lt;br /&gt;
* (Vagabonding) Introduction to Machine Learning&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;CAVE/YURT&#039;&#039;&#039;&lt;br /&gt;
* By &#039;&#039;&#039;2/2&#039;&#039;&#039;, Discuss current results with VT and Bireswar&lt;br /&gt;
** Update experiment script vs. keeping current users&lt;br /&gt;
* By &#039;&#039;&#039;2/8&#039;&#039;&#039;, fix 90/270 degree virtual walls in VRUI&lt;br /&gt;
* By &#039;&#039;&#039;2/15&#039;&#039;&#039;, continue user study at Granoff CAVE&lt;br /&gt;
* By &#039;&#039;&#039;2/21&#039;&#039;&#039;, setup complete evaluation framework for statistical significant effects&lt;br /&gt;
** in Google docs or repository to share with Wallace&lt;br /&gt;
* By &#039;&#039;&#039;3/14&#039;&#039;&#039;, complete 32 users at Granoff CAVE and YURT&lt;br /&gt;
* By &#039;&#039;&#039;3/21&#039;&#039;&#039;, integrate Scalable into VRUI with Wesley&lt;br /&gt;
* By &#039;&#039;&#039;4/13&#039;&#039;&#039;, publication outline and draft for introduction and background sections&lt;br /&gt;
* By &#039;&#039;&#039;4/20&#039;&#039;&#039;, complete all 64 users&lt;br /&gt;
* By &#039;&#039;&#039;5/5&#039;&#039;&#039;, paper draft&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Collaborations&#039;&#039;&#039;&lt;br /&gt;
* By &#039;&#039;&#039;mid February&#039;&#039;&#039;, set up meetings with prospective collaborators&lt;br /&gt;
** Dereck Merck   - 5 minute presentation on 3D US smart visibility at radiology meeting&lt;br /&gt;
** Kristi Wharton - time series confocal microscopy data in the cave&lt;br /&gt;
** search for more collaborators&lt;br /&gt;
* By &#039;&#039;&#039;mid February&#039;&#039;&#039;, complete paper for Computers &amp;amp; Geosciences&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
* yurt&lt;br /&gt;
** ready for grand opening in May&lt;br /&gt;
* wrist/thumb&lt;br /&gt;
** keeping them running and happy&lt;br /&gt;
** some other pending thing?&lt;br /&gt;
** merging the branch of wristVis (Alicia&#039;s version, and some others)&lt;br /&gt;
* gfxtest, et al&lt;br /&gt;
** how do we get it running?&lt;br /&gt;
** can we make it work like the old doc? (sounds like some compromises and requirement analysis may be needed)&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2015|Spring &#039;15]]&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals/Spring_2015&amp;diff=6652</id>
		<title>Plans and Goals/Spring 2015</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals/Spring_2015&amp;diff=6652"/>
		<updated>2015-06-01T16:04:53Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: Created page with &amp;quot;== Plans and Goals (Spring &amp;#039;15) ==  === Connor === &amp;#039;&amp;#039;&amp;#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&amp;#039;&amp;#039;&amp;#039; goals are those that mark the high-level succe...&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Plans and Goals (Spring &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Boldfaced&amp;lt;/span&amp;gt;&#039;&#039;&#039; goals are those that mark the high-level success of each project.&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics VIS Project&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** change abstract to be more of a paper abstract and less of a book abstract&lt;br /&gt;
** make paper skeleton with clear evaluation plans, methods, and expected results&lt;br /&gt;
** determine if making the GD3 Notebook as a third tool is manageable given pre-VIS workload&lt;br /&gt;
* By 1/19: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Complete and freeze GD3 v1 visualization library development&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
** Don&#039;t do more than bringing refactored library up to existing capabilities.&lt;br /&gt;
* By 1/19: E-mail and recruit &amp;gt;=5 experts for each tool that is being evaluated&lt;br /&gt;
* By 2/2: Have all experts scheduled and have the evaluations set in stone and methods/procedure written into paper draft&lt;br /&gt;
* By 2/20: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Have all evaluation completed and coded&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 3/9: E-mail David a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Send out revised draft to all authors&lt;br /&gt;
* By 3/21: Submit abstract to VIS and have a paper draft that is submittable&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit genomics viz paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color palette picker&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** Brainstorm a list of possible evaluations with total &amp;gt;= 5 possible evaluations&lt;br /&gt;
** Send an abstract to Karen and David and a one-paragraph description of the evaluation plan&lt;br /&gt;
** Write paper skeleton&lt;br /&gt;
* By 1/19: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Finish tool&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 1/26: Have a meeting/demo with David and Karen to get feedback on evaluation&lt;br /&gt;
* By 1/26: Run pilot MTurk evaluations on discerinability and preference&lt;br /&gt;
* By 2/9: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Have complete data from MTurk discernability and preference evaluations&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* By 3/2: E-Mail David and Karen a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Have a submittable draft ready&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit color palette paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Continuous Colormaps&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/26: Meet with David and Karen about project (joint with color palette modeling)&lt;br /&gt;
* By 1/26: Freeze data collection&lt;br /&gt;
* By 2/19: Have a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Submit color map paper to VIS&amp;lt;/span&amp;gt;&#039;&#039;&#039; &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
** Deferred&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Post-VIS Goals to 15 May (semester end)&#039;&#039;&#039; =====&lt;br /&gt;
* By 4/20: Have statistics wrapped up for color modeling project&lt;br /&gt;
* By 4/20: Write lessons learned document from the two VIS submissions&lt;br /&gt;
* By 5/11: Have a written outline of a proposal organization&lt;br /&gt;
* By 5/11: Post summer goal list&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;E-mail updates more than you think you need to (i.e., weekly updates)&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
* &#039;&#039;&#039;&amp;lt;span style=&amp;quot;color:steelblue&amp;quot;&amp;gt;Sign up for Sheridan Center&#039;s teaching certification for Fall 2015 semester&amp;lt;/span&amp;gt;&#039;&#039;&#039;&lt;br /&gt;
** Deadline and form activation is in July&lt;br /&gt;
* Work on the outcome of the MAGI submission to Nature Methods &amp;lt;span style=&amp;quot;color: #00a22e&amp;quot;&amp;gt;✓&amp;lt;/span&amp;gt;&lt;br /&gt;
* Practice fast writing&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Send proposal to committee members by &#039;&#039;&#039;1/21&#039;&#039;&#039; [done]&lt;br /&gt;
** Revised the document to address Jeff&#039;s feedback by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
*** Finish the interaction dimension based on literature review by &#039;&#039;&#039;1/27&#039;&#039;&#039;&lt;br /&gt;
*** Incorporate Pearl&#039;s work on causation into analysis methods if appropriate by &#039;&#039;&#039;2/2&#039;&#039;&#039;&lt;br /&gt;
*** Revise the methods section to merge two studies by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
** Revised the document to address Steven&#039;s feedback by &#039;&#039;&#039;2/7&#039;&#039;&#039;&lt;br /&gt;
** Schedule a date by &#039;&#039;&#039;2/15&#039;&#039;&#039;&lt;br /&gt;
** Give the proposal talk by &#039;&#039;&#039;3/31&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Interaction history analysis paper&lt;br /&gt;
** Finish preliminary analysis with Markov chain and action / component frequency features by &#039;&#039;&#039;1/31&#039;&#039;&#039;&lt;br /&gt;
** First paper draft done and ask for Caroline&#039;s feedback by &#039;&#039;&#039;2/21&#039;&#039;&#039;&lt;br /&gt;
** Submit abstract by &#039;&#039;&#039;3/21&#039;&#039;&#039;&lt;br /&gt;
** Submit to VIS by &#039;&#039;&#039;3/31&#039;&#039;&#039;&lt;br /&gt;
** Give a Scivis talk on &#039;&#039;&#039;4/14&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Interface redesign sketched out by &#039;&#039;&#039;2/28&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Edge uncertainty paper&lt;br /&gt;
** Address reviewer comments after receiving feedback&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Have a good job lined up for the fall          &amp;amp;#10003;&lt;br /&gt;
** Keep list of jobs/postdoc opportunities up-to-date          &amp;amp;#10003;&lt;br /&gt;
** Send out applications          &amp;amp;#10003;&lt;br /&gt;
** Research statement by &#039;&#039;&#039;end of January&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Do a practice job talk by &#039;&#039;&#039;end of January&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Do a good interview at MIT/LL on &#039;&#039;&#039;Feb 12/13&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
* Finish project about integrating automatic evaluations with git&lt;br /&gt;
** Clean up MTurk scripts to link into git hook by end of January          &amp;amp;#10003;&lt;br /&gt;
** Run case study on alternative vis designs from our VAST 2014 paper by &#039;&#039;&#039;&amp;lt;s&amp;gt;end of Feb&amp;lt;/s&amp;gt; mid March&#039;&#039;&#039;&lt;br /&gt;
** Submit VIS paper by &#039;&#039;&#039;end of March&#039;&#039;&#039;&lt;br /&gt;
* Resubmit TVCG Fauxvea paper with major revision&lt;br /&gt;
** Plan for revisions by &#039;&#039;&#039;3/2&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Deadline for major revision is &#039;&#039;&#039;May 26&#039;&#039;&#039;&lt;br /&gt;
* Dissertation&lt;br /&gt;
** Tex with outline in private GitHub repo by &#039;&#039;&#039;10/1&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Follow chapter schedule in my [[Media:DCP_steveg_sanitized.pdf|Brown GS 6th-year proposal (DCP)]]&lt;br /&gt;
*** By &#039;&#039;&#039;3/31&#039;&#039;&#039;, draft Chapter 6: Crowdsourced Evaluation Framework (from new experiment)&lt;br /&gt;
*** By &#039;&#039;&#039;3/9&#039;&#039;&#039;, outline Chapter 7: Conclusions&lt;br /&gt;
*** By &#039;&#039;&#039;3/16&#039;&#039;&#039;, outline Chapter 1: Introduction&lt;br /&gt;
*** By &#039;&#039;&#039;3/23&#039;&#039;&#039;, outline Chapter 2: Background          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;end of April&#039;&#039;&#039;, draft of full document done and circulated to committee&lt;br /&gt;
*** Run through the [http://cs.brown.edu/degrees/doctoral/proposal/Thesis_Proposal_Checklist.pdf thesis checklist]&lt;br /&gt;
*** By &#039;&#039;&#039;August&#039;&#039;&#039;, defense!&lt;br /&gt;
* Misc&lt;br /&gt;
** Help David and Hua successfully submit NSF grant, deadline on &#039;&#039;&#039;1/12&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Due my reviews/coordinating as a CHI Works-in-progress PC member, wrapped up by &#039;&#039;&#039;1/29&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Check up on TVCG paper submitted last semester: any revisions needed?          &amp;amp;#10003;&lt;br /&gt;
** Make at least one of my private github repos into a public one          &amp;amp;#10003;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* South Africa &lt;br /&gt;
** results created and shared&lt;br /&gt;
** include multi-fiber methods&lt;br /&gt;
* Dan pediatric bipolar&lt;br /&gt;
** complete paper writing&lt;br /&gt;
** include region segmentation methods&lt;br /&gt;
** consider potential additional pubs&lt;br /&gt;
* Edinburgh&lt;br /&gt;
** make data resource paper&lt;br /&gt;
** option: multi-fiber atlas?&lt;br /&gt;
** option: reproducing aging studies, e.g. STL FBL&lt;br /&gt;
* Multi-fiber estimation &lt;br /&gt;
** put on finishing touches on journal paper and submit&lt;br /&gt;
* Thesis writing&lt;br /&gt;
** make some progress on introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* cave running and with demos and working for may opening&lt;br /&gt;
** cavePainting, advisor, cs137 examples, VT project&lt;br /&gt;
** hw and low-level software testing/reliability plan&lt;br /&gt;
** application software development easier&lt;br /&gt;
* longer-term funding progress&lt;br /&gt;
** some specific targets for proposals: cave, cognition, expedition, brains&lt;br /&gt;
* full Bowman experiment run by Wesley and/or Johannes in Yurt&lt;br /&gt;
* good CS16&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Coursework&#039;&#039;&#039;&lt;br /&gt;
* HCI Seminar&lt;br /&gt;
* Introduction to Data Science&lt;br /&gt;
* (Vagabonding) Introduction to Machine Learning&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;CAVE/YURT&#039;&#039;&#039;&lt;br /&gt;
* By &#039;&#039;&#039;2/2&#039;&#039;&#039;, Discuss current results with VT and Bireswar&lt;br /&gt;
** Update experiment script vs. keeping current users&lt;br /&gt;
* By &#039;&#039;&#039;2/8&#039;&#039;&#039;, fix 90/270 degree virtual walls in VRUI&lt;br /&gt;
* By &#039;&#039;&#039;2/15&#039;&#039;&#039;, continue user study at Granoff CAVE&lt;br /&gt;
* By &#039;&#039;&#039;2/21&#039;&#039;&#039;, setup complete evaluation framework for statistical significant effects&lt;br /&gt;
** in Google docs or repository to share with Wallace&lt;br /&gt;
* By &#039;&#039;&#039;3/14&#039;&#039;&#039;, complete 32 users at Granoff CAVE and YURT&lt;br /&gt;
* By &#039;&#039;&#039;3/21&#039;&#039;&#039;, integrate Scalable into VRUI with Wesley&lt;br /&gt;
* By &#039;&#039;&#039;4/13&#039;&#039;&#039;, publication outline and draft for introduction and background sections&lt;br /&gt;
* By &#039;&#039;&#039;4/20&#039;&#039;&#039;, complete all 64 users&lt;br /&gt;
* By &#039;&#039;&#039;5/5&#039;&#039;&#039;, paper draft&lt;br /&gt;
&lt;br /&gt;
&#039;&#039;&#039;Collaborations&#039;&#039;&#039;&lt;br /&gt;
* By &#039;&#039;&#039;mid February&#039;&#039;&#039;, set up meetings with prospective collaborators&lt;br /&gt;
** Dereck Merck   - 5 minute presentation on 3D US smart visibility at radiology meeting&lt;br /&gt;
** Kristi Wharton - time series confocal microscopy data in the cave&lt;br /&gt;
** search for more collaborators&lt;br /&gt;
* By &#039;&#039;&#039;mid February&#039;&#039;&#039;, complete paper for Computers &amp;amp; Geosciences&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
* yurt&lt;br /&gt;
** ready for grand opening in May&lt;br /&gt;
* wrist/thumb&lt;br /&gt;
** keeping them running and happy&lt;br /&gt;
** some other pending thing?&lt;br /&gt;
** merging the branch of wristVis (Alicia&#039;s version, and some others)&lt;br /&gt;
* gfxtest, et al&lt;br /&gt;
** how do we get it running?&lt;br /&gt;
** can we make it work like the old doc? (sounds like some compromises and requirement analysis may be needed)&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6651</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6651"/>
		<updated>2015-05-18T20:39:59Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a zoetrope-like scene of a bat flying (EJ Kalafarski&#039;s final project from CS137, Fall 2008)&lt;br /&gt;
* a swamp-like scene (Maybe Dorion Barrill&#039;s final project?  Maybe Trevor O&#039;Brien&#039;s first drawing from Fall 2008?)&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
Adding this command is useful automatically loading art for demos:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;-c LoadArtwork=${absolute_path}/${name}.3DArt&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
* Hard coded paths&lt;br /&gt;
** Some 3DArt files refer to absolute paths from the Granoff Cave.  Our current workaround is to create those expected files on the cave filesystem.  For example, &amp;quot;final_town.3DArt&amp;quot; looks for this file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;/share/cs137/dollar-g-cs137/tools/linux/data/cavepaintings/dbarill/brushtips_dorion.jpg&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
which we copied from dbarill&#039;s user directory to the above path.  We have write access to &amp;quot;/share/c137&amp;quot;, so we can add more files as needed, as long as they&#039;re in that part of the tree.&lt;br /&gt;
&lt;br /&gt;
===Debugging tips===&lt;br /&gt;
&lt;br /&gt;
List the image files used by a 3DArt file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;strings vortexblue.3DArt | grep &#039;jpg\|JPG\|png\|PNG&#039; | sort | uniq&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Yurt_Demos&amp;diff=6650</id>
		<title>Yurt Demos</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Yurt_Demos&amp;diff=6650"/>
		<updated>2015-05-18T16:14:22Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: Created page with &amp;quot;CavePainting_In_The_Yurt&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[CavePainting_In_The_Yurt]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6646</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6646"/>
		<updated>2015-05-17T03:31:35Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
Adding this command is useful automatically loading art for demos:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;-c LoadArtwork=${absolute_path}/${name}.3DArt&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
===Debugging tips===&lt;br /&gt;
&lt;br /&gt;
List the image files used by a 3DArt file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;strings vortexblue.3DArt | grep &#039;jpg\|JPG\|png\|PNG&#039; | sort | uniq&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6645</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6645"/>
		<updated>2015-05-17T03:31:06Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
Adding this command is useful automatically loading art for demos:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;-c LoadArtwork=${dir}/${base}.3DArt&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
===Debugging tips===&lt;br /&gt;
&lt;br /&gt;
List the image files used by a 3DArt file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;strings vortexblue.3DArt | grep &#039;jpg\|JPG\|png\|PNG&#039; | sort | uniq&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6643</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6643"/>
		<updated>2015-05-11T17:48:32Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
===Debugging tips===&lt;br /&gt;
&lt;br /&gt;
List the image files used by a 3DArt file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;strings vortexblue.3DArt | grep &#039;jpg\|JPG\|png\|PNG&#039; | sort | uniq&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6642</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6642"/>
		<updated>2015-05-11T17:48:04Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Major issues */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
===Debugging tips===&lt;br /&gt;
&lt;br /&gt;
List the image files used by a 3DArt file:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;strings MyDrawing.3DArt | grep &#039;jpg\|JPG\|png\|PNG&#039;&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6641</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6641"/>
		<updated>2015-05-11T17:00:45Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
A large number of scenes are archived on both the Brown CS and CCV filesystems:&lt;br /&gt;
* Brown CS: /research/graphics/data/cavepainting&lt;br /&gt;
* CCV: /gpfs/data/dhl/cavepainting/&lt;br /&gt;
&lt;br /&gt;
The course materials from CS137 also are a good reference for past work:&lt;br /&gt;
* Web: http://cs.brown.edu/courses/csci1370/&lt;br /&gt;
* Brown CS: /pro/web/web/courses/cs137&lt;br /&gt;
&lt;br /&gt;
The Brown CS course directory has a ton of content that&#039;s not externally available, such as movies, photos, etc .&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6640</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6640"/>
		<updated>2015-05-11T16:56:00Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Menu and Interface usable for students in CS137&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6639</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6639"/>
		<updated>2015-05-11T16:54:31Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
==Demo Scenes==&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
==Major issues==&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
==Goals==&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6638</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6638"/>
		<updated>2015-05-11T16:54:13Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, major issues, and goals.&lt;br /&gt;
&lt;br /&gt;
=Demo Scenes=&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
=Major issues=&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.  It&#039;s not clear why this is happening, but a first test could check if new textures can be added (this would tell us if all textures are broken or just the loading). &lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;br /&gt;
&lt;br /&gt;
=Goals=&lt;br /&gt;
&lt;br /&gt;
* All old scenes files working and no major issues!&lt;br /&gt;
* Examples of high resolution textures and large scenes that show off  the resolution of the cave&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6637</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6637"/>
		<updated>2015-05-11T16:51:27Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes demo scenes, outstanding bugs, and goals.&lt;br /&gt;
&lt;br /&gt;
=Demo Scenes=&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing and demos:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
They include a lot of high-quality content, including text, high-resolution textures, and &amp;quot;largeness&amp;quot;.  We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;br /&gt;
&lt;br /&gt;
=Outstanding Bugs=&lt;br /&gt;
&lt;br /&gt;
* Crashing&lt;br /&gt;
** After a scene has been loaded, it will crash if the wands are not trackable.  This may also cause crashes if object occlude the wands from the view of the tracker, but we haven&#039;t seen this happen.&lt;br /&gt;
* Loading problems&lt;br /&gt;
** Textures don&#039;t seem to load.  Instead, they show up as wireframes.&lt;br /&gt;
** Scenes load quickly the first, but it can be very slow to load subsequent scenes.  This is probably due to the high overhead of deleting objects in cavepainting.  This problem seems like a crash, as the scene stops updating, but with enough time it should eventually start running again with the newly loaded scene.&lt;br /&gt;
* Interaction problems&lt;br /&gt;
** Currently keyboard input doesn&#039;t work.  John says the linux vrg3d server has some issues with keyboards, and the windows server has some stability problems (but keyboard access is okay).  This is probably something that can be fixed with come configuration.  Ultimately, we&#039;ll want a wireless keyboard for use inside the yurt.&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6636</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6636"/>
		<updated>2015-05-11T16:43:47Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Test Cases */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes tests we&#039;ve run, outstanding bugs, and goals.&lt;br /&gt;
&lt;br /&gt;
=Test Cases=&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down:&lt;br /&gt;
* a swamp-like scene&lt;br /&gt;
* a zoetrope-like scene of a bat flying.&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6635</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6635"/>
		<updated>2015-05-11T16:43:22Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes tests we&#039;ve run, outstanding bugs, and goals.&lt;br /&gt;
&lt;br /&gt;
=Test Cases=&lt;br /&gt;
&lt;br /&gt;
The following scenes are useful for testing:&lt;br /&gt;
&lt;br /&gt;
* Jadrian&#039;s termite mound (2008)&lt;br /&gt;
* Dorian Barill&#039;s town scene (2008&lt;br /&gt;
* Dorian Barill&#039;s library scene (2008).&lt;br /&gt;
&lt;br /&gt;
We&#039;d also have a vague idea of other useful scenes, but they need to be tracked down.  This includes a swamp-like scene and a zoetrope-like scene of a bat flying.&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6634</id>
		<title>CavePainting In The Yurt</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting_In_The_Yurt&amp;diff=6634"/>
		<updated>2015-05-11T16:38:39Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: Created page with &amp;quot;This page is a place to document the process of running CavePainting in the Yurt.  This includes tests we&amp;#039;ve run, outstanding bugs, and goals.&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This page is a place to document the process of running [[CavePainting]] in the Yurt.  This includes tests we&#039;ve run, outstanding bugs, and goals.&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6595</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6595"/>
		<updated>2015-01-12T19:16:44Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Ryan */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics VIS Project&#039;&#039;&#039; =====&lt;br /&gt;
&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** change abstract to be more of a paper abstract and less of a book abstract&lt;br /&gt;
** make paper skeleton with clear evaluation plans, methods, and expected results&lt;br /&gt;
** determine if making the GD3 Notebook as a third tool is manageable given pre-VIS workload&lt;br /&gt;
* By 1/19: Freeze GD3 visualization library development&lt;br /&gt;
** Don&#039;t do more than bringing refactored library up to existing capabilities.&lt;br /&gt;
* By 1/19: E-mail and recruit &amp;gt;=5 experts for each tool that is being evaluated&lt;br /&gt;
* By 2/2: Have all experts scheduled and have the evaluations set in stone and methods/procedure written into paper draft&lt;br /&gt;
* By 2/20: Have all evaluation completed and coded&lt;br /&gt;
* By 3/9: E-mail David a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Send out revised draft to all authors&lt;br /&gt;
* By 3/21: Submit abstract to VIS and have a paper draft that is submittable&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color palette picker&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** Brainstorm a list of possible evaluations with total &amp;gt;= 5 possible evaluations&lt;br /&gt;
** Send an abstract to Karen and David and a one-paragraph description of the evaluation plan&lt;br /&gt;
** Write paper skeleton&lt;br /&gt;
* By 1/19: Fix all crash-inducing bugs in model and have a meeting/demo with David and Karen to get feedback on evaluation&lt;br /&gt;
* By 1/26: Run pilot MTurk evaluations on discerinability and preference&lt;br /&gt;
* By 2/9: Have complete data from MTurk discernability and preference evaluations&lt;br /&gt;
* By 3/2: E-Mail David and Karen a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Have a submittable draft ready&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Continuous Colormaps&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/19: Meet with David and Karen about project&lt;br /&gt;
* By 1/26: Freeze data collection&lt;br /&gt;
* By 2/19: Have a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* E-mail updates more than you think you need to (i.e., weekly updates)&lt;br /&gt;
* Investigate and sign up for Sheridan Center&#039;s teaching certification for Fall 2015 semester&lt;br /&gt;
* Work on the outcome of the MAGI submission to Nature Methods&lt;br /&gt;
* Practice fast writing&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Finalize committee members&lt;br /&gt;
** Send proposal to committee members&lt;br /&gt;
** Give a practice talk&lt;br /&gt;
&lt;br /&gt;
* Edge uncertainty paper&lt;br /&gt;
** Submit to TVCG&lt;br /&gt;
&lt;br /&gt;
* Aardvark system evaluation&lt;br /&gt;
** Run 12 participants by &#039;&#039;&#039;Sep.26&#039;&#039;&#039;&lt;br /&gt;
** Finish the analysis of the first 12 participants by &#039;&#039;&#039;Sep.30&#039;&#039;&#039;&lt;br /&gt;
** Wrap up and finish the final report by &#039;&#039;&#039;Oct.15&#039;&#039;&#039;&lt;br /&gt;
** Further analyze the data using various techniques, e.g. sub-graph extractions and sequence visualizations to identify analysis strategies and relate features to insight generation&lt;br /&gt;
&lt;br /&gt;
* Crowd gaze paper&lt;br /&gt;
** Help with the TVCG submission&lt;br /&gt;
&lt;br /&gt;
* BraiNet&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Finish crowd-eyetracking project&lt;br /&gt;
** Follow-up MTurk experiment run by &#039;&#039;&#039;9/12&#039;&#039;&#039;, data analyzed by &#039;&#039;&#039;9/24&#039;&#039;&#039; with Radu          &amp;amp;#10003;&lt;br /&gt;
** Circulate updated TVCG draft with results by &#039;&#039;&#039;9/30&#039;&#039;&#039; and submit &#039;&#039;&#039;&amp;lt;s&amp;gt;early October&amp;lt;/s&amp;gt;         &amp;amp;#10003;&lt;br /&gt;
* Integrating automatic evaluations with github&lt;br /&gt;
** Clean up MTurk scripts to link into git hook by &#039;&#039;&#039;&amp;lt;s&amp;gt;mid&amp;lt;/s&amp;gt; end of October&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Run case study on alternative vis designs from our VAST 2014 paper by &#039;&#039;&#039;end of November&#039;&#039;&#039;&lt;br /&gt;
** Draft VIS paper by &#039;&#039;&#039;mid December&#039;&#039;&#039;&lt;br /&gt;
** Submit &#039;&#039;&#039;end of March&#039;&#039;&#039;&lt;br /&gt;
* Assist Hua with Aptima study and report&lt;br /&gt;
** Report due to Aptima by &#039;&#039;&#039;mid October&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Outline of paper on individual differences in visualization by &#039;&#039;&#039;end of October&#039;&#039;&#039;&lt;br /&gt;
* Have a good VAST task in Paris (11/9-11/16)&lt;br /&gt;
** Iterate on presentation several times, practice at scivis on &#039;&#039;&#039;10/28&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Practice talk at Tufts on &#039;&#039;&#039;10/29&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Network with colleagues at conference          &amp;amp;#10003;&lt;br /&gt;
* Have a job next fall!&lt;br /&gt;
** List of postdoc opportunities compiled before Paris trip, by &#039;&#039;&#039;11/5&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Teaching statement from notes by &#039;&#039;&#039;end of September&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Research statement by &#039;&#039;&#039;end of November&#039;&#039;&#039; (when git study wraps up)&lt;br /&gt;
* Dissertation&lt;br /&gt;
** Tex with outline in private GitHub repo by &#039;&#039;&#039;10/1&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Follow chapter schedule in my [[Media:DCP_steveg_sanitized.pdf|Brown GS 6th-year proposal (DCP)]]&lt;br /&gt;
*** By &#039;&#039;&#039;12/8&#039;&#039;&#039;, draft Chapter 3: Modeling Task Performance with Non-Experts (from CHI &#039;12 paper)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/15&#039;&#039;&#039;, draft Chapter 4: Modeling Gaze Behaviors with Non-Experts (from TVCG paper in submission)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/22&#039;&#039;&#039;, draft Chapter 5: Measuring Insights and Task Performance for Visual Analytics (from VAST &#039;14 paper)&lt;br /&gt;
*** By &#039;&#039;&#039;1/12&#039;&#039;&#039;, draft Chapter 6: Crowdsourced Evaluation Framework (from new experiment)&lt;br /&gt;
*** By &#039;&#039;&#039;1/19&#039;&#039;&#039;, draft Chapter 7: Conclusions&lt;br /&gt;
*** By &#039;&#039;&#039;1/26&#039;&#039;&#039;, draft Chapter 1: Introduction&lt;br /&gt;
*** By &#039;&#039;&#039;2/9&#039;&#039;&#039;, draft Chapter 2: Background&lt;br /&gt;
*** By &#039;&#039;&#039;3/2&#039;&#039;&#039;, draft 2 of full document done and circulated to committee&lt;br /&gt;
*** By &#039;&#039;&#039;mid March&#039;&#039;&#039;, set defense date and time, run through the [http://cs.brown.edu/degrees/doctoral/proposal/Thesis_Proposal_Checklist.pdf thesis checklist]&lt;br /&gt;
*** By &#039;&#039;&#039;mid April&#039;&#039;&#039;, defense!&lt;br /&gt;
*** &#039;&#039;&#039;5/1&#039;&#039;&#039;: Hard deadline for dissertation submission, &amp;quot;apply to graduate&amp;quot; on Banner&lt;br /&gt;
&lt;br /&gt;
* Misc&lt;br /&gt;
** Be a helpful TA for CS237          &amp;amp;#10003;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* South Africa &lt;br /&gt;
** results created and shared&lt;br /&gt;
** include multi-fiber methods&lt;br /&gt;
* Dan pediatric bipolar&lt;br /&gt;
** complete paper writing&lt;br /&gt;
** include region segmentation methods&lt;br /&gt;
** consider potential additional pubs&lt;br /&gt;
* Edinburgh&lt;br /&gt;
** make data resource paper&lt;br /&gt;
** option: multi-fiber atlas?&lt;br /&gt;
** option: reproducing aging studies, e.g. STL FBL&lt;br /&gt;
* Multi-fiber estimation &lt;br /&gt;
** put on finishing touches on journal paper and submit&lt;br /&gt;
* Thesis writing&lt;br /&gt;
** make some progress on introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* cave running and with demos and working for may opening&lt;br /&gt;
** cavePainting, advisor, cs137 examples, VT project&lt;br /&gt;
** hw and low-level software testing/reliability plan&lt;br /&gt;
** application software development easier&lt;br /&gt;
* longer-term funding progress&lt;br /&gt;
** some specific targets for proposals: cave, cognition, expedition, brains&lt;br /&gt;
* full Bowman experiment run by Wesley and/or Johannes in Yurt&lt;br /&gt;
* good CS16&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* complete CSCI2370   Interdisciplinary Scientific Visualization&lt;br /&gt;
** get some experience working with the CAVE (and if possible YURT)&lt;br /&gt;
* complete CSCI2951-B Data-Driven Vision and Graphics&lt;br /&gt;
* complete Programming Comps&lt;br /&gt;
* collect ideas for the Research Comps (or use master thesis if possible)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
* wrist/thumb&lt;br /&gt;
* yurt&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6594</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6594"/>
		<updated>2015-01-12T19:16:31Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Ryan */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics VIS Project&#039;&#039;&#039; =====&lt;br /&gt;
&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** change abstract to be more of a paper abstract and less of a book abstract&lt;br /&gt;
** make paper skeleton with clear evaluation plans, methods, and expected results&lt;br /&gt;
** determine if making the GD3 Notebook as a third tool is manageable given pre-VIS workload&lt;br /&gt;
* By 1/19: Freeze GD3 visualization library development&lt;br /&gt;
** Don&#039;t do more than bringing refactored library up to existing capabilities.&lt;br /&gt;
* By 1/19: E-mail and recruit &amp;gt;=5 experts for each tool that is being evaluated&lt;br /&gt;
* By 2/2: Have all experts scheduled and have the evaluations set in stone and methods/procedure written into paper draft&lt;br /&gt;
* By 2/20: Have all evaluation completed and coded&lt;br /&gt;
* By 3/9: E-mail David a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Send out revised draft to all authors&lt;br /&gt;
* By 3/21: Submit abstract to VIS and have a paper draft that is submittable&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color palette picker&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** Brainstorm a list of possible evaluations with total &amp;gt;= 5 possible evaluations&lt;br /&gt;
** Send an abstract to Karen and David and a one-paragraph description of the evaluation plan&lt;br /&gt;
** Write paper skeleton&lt;br /&gt;
* By 1/19: Fix all crash-inducing bugs in model and have a meeting/demo with David and Karen to get feedback on evaluation&lt;br /&gt;
* By 1/26: Run pilot MTurk evaluations on discerinability and preference&lt;br /&gt;
* By 2/9: Have complete data from MTurk discernability and preference evaluations&lt;br /&gt;
* By 3/2: E-Mail David and Karen a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Have a submittable draft ready&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Continuous Colormaps&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/19: Meet with David and Karen about project&lt;br /&gt;
* By 1/26: Freeze data collection&lt;br /&gt;
* By 2/19: Have a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* E-mail updates more than you think you need to (i.e., weekly updates)&lt;br /&gt;
* Investigate and sign up for Sheridan Center&#039;s teaching certification for Fall 2015 semester&lt;br /&gt;
* Work on the outcome of the MAGI submission to Nature Methods&lt;br /&gt;
* Practice fast writing&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Finalize committee members&lt;br /&gt;
** Send proposal to committee members&lt;br /&gt;
** Give a practice talk&lt;br /&gt;
&lt;br /&gt;
* Edge uncertainty paper&lt;br /&gt;
** Submit to TVCG&lt;br /&gt;
&lt;br /&gt;
* Aardvark system evaluation&lt;br /&gt;
** Run 12 participants by &#039;&#039;&#039;Sep.26&#039;&#039;&#039;&lt;br /&gt;
** Finish the analysis of the first 12 participants by &#039;&#039;&#039;Sep.30&#039;&#039;&#039;&lt;br /&gt;
** Wrap up and finish the final report by &#039;&#039;&#039;Oct.15&#039;&#039;&#039;&lt;br /&gt;
** Further analyze the data using various techniques, e.g. sub-graph extractions and sequence visualizations to identify analysis strategies and relate features to insight generation&lt;br /&gt;
&lt;br /&gt;
* Crowd gaze paper&lt;br /&gt;
** Help with the TVCG submission&lt;br /&gt;
&lt;br /&gt;
* BraiNet&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Finish crowd-eyetracking project&lt;br /&gt;
** Follow-up MTurk experiment run by &#039;&#039;&#039;9/12&#039;&#039;&#039;, data analyzed by &#039;&#039;&#039;9/24&#039;&#039;&#039; with Radu          &amp;amp;#10003;&lt;br /&gt;
** Circulate updated TVCG draft with results by &#039;&#039;&#039;9/30&#039;&#039;&#039; and submit &#039;&#039;&#039;&amp;lt;s&amp;gt;early October&amp;lt;/s&amp;gt;         &amp;amp;#10003;&lt;br /&gt;
* Integrating automatic evaluations with github&lt;br /&gt;
** Clean up MTurk scripts to link into git hook by &#039;&#039;&#039;&amp;lt;s&amp;gt;mid&amp;lt;/s&amp;gt; end of October&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Run case study on alternative vis designs from our VAST 2014 paper by &#039;&#039;&#039;end of November&#039;&#039;&#039;&lt;br /&gt;
** Draft VIS paper by &#039;&#039;&#039;mid December&#039;&#039;&#039;&lt;br /&gt;
** Submit &#039;&#039;&#039;end of March&#039;&#039;&#039;&lt;br /&gt;
* Assist Hua with Aptima study and report&lt;br /&gt;
** Report due to Aptima by &#039;&#039;&#039;mid October&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Outline of paper on individual differences in visualization by &#039;&#039;&#039;end of October&#039;&#039;&#039;&lt;br /&gt;
* Have a good VAST task in Paris (11/9-11/16)&lt;br /&gt;
** Iterate on presentation several times, practice at scivis on &#039;&#039;&#039;10/28&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Practice talk at Tufts on &#039;&#039;&#039;10/29&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Network with colleagues at conference          &amp;amp;#10003;&lt;br /&gt;
* Have a job next fall!&lt;br /&gt;
** List of postdoc opportunities compiled before Paris trip, by &#039;&#039;&#039;11/5&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Teaching statement from notes by &#039;&#039;&#039;end of September&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Research statement by &#039;&#039;&#039;end of November&#039;&#039;&#039; (when git study wraps up)&lt;br /&gt;
* Dissertation&lt;br /&gt;
** Tex with outline in private GitHub repo by &#039;&#039;&#039;10/1&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Follow chapter schedule in my [[Media:DCP_steveg_sanitized.pdf|Brown GS 6th-year proposal (DCP)]]&lt;br /&gt;
*** By &#039;&#039;&#039;12/8&#039;&#039;&#039;, draft Chapter 3: Modeling Task Performance with Non-Experts (from CHI &#039;12 paper)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/15&#039;&#039;&#039;, draft Chapter 4: Modeling Gaze Behaviors with Non-Experts (from TVCG paper in submission)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/22&#039;&#039;&#039;, draft Chapter 5: Measuring Insights and Task Performance for Visual Analytics (from VAST &#039;14 paper)&lt;br /&gt;
*** By &#039;&#039;&#039;1/12&#039;&#039;&#039;, draft Chapter 6: Crowdsourced Evaluation Framework (from new experiment)&lt;br /&gt;
*** By &#039;&#039;&#039;1/19&#039;&#039;&#039;, draft Chapter 7: Conclusions&lt;br /&gt;
*** By &#039;&#039;&#039;1/26&#039;&#039;&#039;, draft Chapter 1: Introduction&lt;br /&gt;
*** By &#039;&#039;&#039;2/9&#039;&#039;&#039;, draft Chapter 2: Background&lt;br /&gt;
*** By &#039;&#039;&#039;3/2&#039;&#039;&#039;, draft 2 of full document done and circulated to committee&lt;br /&gt;
*** By &#039;&#039;&#039;mid March&#039;&#039;&#039;, set defense date and time, run through the [http://cs.brown.edu/degrees/doctoral/proposal/Thesis_Proposal_Checklist.pdf thesis checklist]&lt;br /&gt;
*** By &#039;&#039;&#039;mid April&#039;&#039;&#039;, defense!&lt;br /&gt;
*** &#039;&#039;&#039;5/1&#039;&#039;&#039;: Hard deadline for dissertation submission, &amp;quot;apply to graduate&amp;quot; on Banner&lt;br /&gt;
&lt;br /&gt;
* Misc&lt;br /&gt;
** Be a helpful TA for CS237          &amp;amp;#10003;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* South Africa &lt;br /&gt;
** results created and shared&lt;br /&gt;
** include multi-fiber methods&lt;br /&gt;
* Dan pediatric bipolar&lt;br /&gt;
** complete paper writing&lt;br /&gt;
** include region segmentation methods&lt;br /&gt;
** consider potential additional pubs&lt;br /&gt;
* Edinburgh&lt;br /&gt;
** make data resource paper&lt;br /&gt;
** option: multi-fiber atlas?&lt;br /&gt;
** option: reproducing aging studies, e.g. STL FBL&lt;br /&gt;
* Multi-fiber estimation &lt;br /&gt;
** Put on finishing touches on journal paper and submit&lt;br /&gt;
* Thesis writing&lt;br /&gt;
** Make some progress on introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* cave running and with demos and working for may opening&lt;br /&gt;
** cavePainting, advisor, cs137 examples, VT project&lt;br /&gt;
** hw and low-level software testing/reliability plan&lt;br /&gt;
** application software development easier&lt;br /&gt;
* longer-term funding progress&lt;br /&gt;
** some specific targets for proposals: cave, cognition, expedition, brains&lt;br /&gt;
* full Bowman experiment run by Wesley and/or Johannes in Yurt&lt;br /&gt;
* good CS16&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* complete CSCI2370   Interdisciplinary Scientific Visualization&lt;br /&gt;
** get some experience working with the CAVE (and if possible YURT)&lt;br /&gt;
* complete CSCI2951-B Data-Driven Vision and Graphics&lt;br /&gt;
* complete Programming Comps&lt;br /&gt;
* collect ideas for the Research Comps (or use master thesis if possible)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
* wrist/thumb&lt;br /&gt;
* yurt&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6593</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6593"/>
		<updated>2015-01-12T19:15:46Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Ryan */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;15) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Genomics VIS Project&#039;&#039;&#039; =====&lt;br /&gt;
&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** change abstract to be more of a paper abstract and less of a book abstract&lt;br /&gt;
** make paper skeleton with clear evaluation plans, methods, and expected results&lt;br /&gt;
** determine if making the GD3 Notebook as a third tool is manageable given pre-VIS workload&lt;br /&gt;
* By 1/19: Freeze GD3 visualization library development&lt;br /&gt;
** Don&#039;t do more than bringing refactored library up to existing capabilities.&lt;br /&gt;
* By 1/19: E-mail and recruit &amp;gt;=5 experts for each tool that is being evaluated&lt;br /&gt;
* By 2/2: Have all experts scheduled and have the evaluations set in stone and methods/procedure written into paper draft&lt;br /&gt;
* By 2/20: Have all evaluation completed and coded&lt;br /&gt;
* By 3/9: E-mail David a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Send out revised draft to all authors&lt;br /&gt;
* By 3/21: Submit abstract to VIS and have a paper draft that is submittable&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Color palette picker&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/12 (over break):&lt;br /&gt;
** Brainstorm a list of possible evaluations with total &amp;gt;= 5 possible evaluations&lt;br /&gt;
** Send an abstract to Karen and David and a one-paragraph description of the evaluation plan&lt;br /&gt;
** Write paper skeleton&lt;br /&gt;
* By 1/19: Fix all crash-inducing bugs in model and have a meeting/demo with David and Karen to get feedback on evaluation&lt;br /&gt;
* By 1/26: Run pilot MTurk evaluations on discerinability and preference&lt;br /&gt;
* By 2/9: Have complete data from MTurk discernability and preference evaluations&lt;br /&gt;
* By 3/2: E-Mail David and Karen a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/16: Have a submittable draft ready&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Continuous Colormaps&#039;&#039;&#039; =====&lt;br /&gt;
* By 1/19: Meet with David and Karen about project&lt;br /&gt;
* By 1/26: Freeze data collection&lt;br /&gt;
* By 2/19: Have a complete, rough paper draft for VIS submission&lt;br /&gt;
* By 3/21: Submit abstract to VIS&lt;br /&gt;
* By 3/31: Submit paper to VIS&lt;br /&gt;
&lt;br /&gt;
===== &#039;&#039;&#039;Other&#039;&#039;&#039; =====&lt;br /&gt;
* E-mail updates more than you think you need to (i.e., weekly updates)&lt;br /&gt;
* Investigate and sign up for Sheridan Center&#039;s teaching certification for Fall 2015 semester&lt;br /&gt;
* Work on the outcome of the MAGI submission to Nature Methods&lt;br /&gt;
* Practice fast writing&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Finalize committee members&lt;br /&gt;
** Send proposal to committee members&lt;br /&gt;
** Give a practice talk&lt;br /&gt;
&lt;br /&gt;
* Edge uncertainty paper&lt;br /&gt;
** Submit to TVCG&lt;br /&gt;
&lt;br /&gt;
* Aardvark system evaluation&lt;br /&gt;
** Run 12 participants by &#039;&#039;&#039;Sep.26&#039;&#039;&#039;&lt;br /&gt;
** Finish the analysis of the first 12 participants by &#039;&#039;&#039;Sep.30&#039;&#039;&#039;&lt;br /&gt;
** Wrap up and finish the final report by &#039;&#039;&#039;Oct.15&#039;&#039;&#039;&lt;br /&gt;
** Further analyze the data using various techniques, e.g. sub-graph extractions and sequence visualizations to identify analysis strategies and relate features to insight generation&lt;br /&gt;
&lt;br /&gt;
* Crowd gaze paper&lt;br /&gt;
** Help with the TVCG submission&lt;br /&gt;
&lt;br /&gt;
* BraiNet&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Finish crowd-eyetracking project&lt;br /&gt;
** Follow-up MTurk experiment run by &#039;&#039;&#039;9/12&#039;&#039;&#039;, data analyzed by &#039;&#039;&#039;9/24&#039;&#039;&#039; with Radu          &amp;amp;#10003;&lt;br /&gt;
** Circulate updated TVCG draft with results by &#039;&#039;&#039;9/30&#039;&#039;&#039; and submit &#039;&#039;&#039;&amp;lt;s&amp;gt;early October&amp;lt;/s&amp;gt;         &amp;amp;#10003;&lt;br /&gt;
* Integrating automatic evaluations with github&lt;br /&gt;
** Clean up MTurk scripts to link into git hook by &#039;&#039;&#039;&amp;lt;s&amp;gt;mid&amp;lt;/s&amp;gt; end of October&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Run case study on alternative vis designs from our VAST 2014 paper by &#039;&#039;&#039;end of November&#039;&#039;&#039;&lt;br /&gt;
** Draft VIS paper by &#039;&#039;&#039;mid December&#039;&#039;&#039;&lt;br /&gt;
** Submit &#039;&#039;&#039;end of March&#039;&#039;&#039;&lt;br /&gt;
* Assist Hua with Aptima study and report&lt;br /&gt;
** Report due to Aptima by &#039;&#039;&#039;mid October&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Outline of paper on individual differences in visualization by &#039;&#039;&#039;end of October&#039;&#039;&#039;&lt;br /&gt;
* Have a good VAST task in Paris (11/9-11/16)&lt;br /&gt;
** Iterate on presentation several times, practice at scivis on &#039;&#039;&#039;10/28&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Practice talk at Tufts on &#039;&#039;&#039;10/29&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Network with colleagues at conference          &amp;amp;#10003;&lt;br /&gt;
* Have a job next fall!&lt;br /&gt;
** List of postdoc opportunities compiled before Paris trip, by &#039;&#039;&#039;11/5&#039;&#039;&#039; [in progress]&lt;br /&gt;
** Teaching statement from notes by &#039;&#039;&#039;end of September&#039;&#039;&#039;         &amp;amp;#10003;&lt;br /&gt;
** Research statement by &#039;&#039;&#039;end of November&#039;&#039;&#039; (when git study wraps up)&lt;br /&gt;
* Dissertation&lt;br /&gt;
** Tex with outline in private GitHub repo by &#039;&#039;&#039;10/1&#039;&#039;&#039;          &amp;amp;#10003;&lt;br /&gt;
** Follow chapter schedule in my [[Media:DCP_steveg_sanitized.pdf|Brown GS 6th-year proposal (DCP)]]&lt;br /&gt;
*** By &#039;&#039;&#039;12/8&#039;&#039;&#039;, draft Chapter 3: Modeling Task Performance with Non-Experts (from CHI &#039;12 paper)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/15&#039;&#039;&#039;, draft Chapter 4: Modeling Gaze Behaviors with Non-Experts (from TVCG paper in submission)          &amp;amp;#10003;&lt;br /&gt;
*** By &#039;&#039;&#039;12/22&#039;&#039;&#039;, draft Chapter 5: Measuring Insights and Task Performance for Visual Analytics (from VAST &#039;14 paper)&lt;br /&gt;
*** By &#039;&#039;&#039;1/12&#039;&#039;&#039;, draft Chapter 6: Crowdsourced Evaluation Framework (from new experiment)&lt;br /&gt;
*** By &#039;&#039;&#039;1/19&#039;&#039;&#039;, draft Chapter 7: Conclusions&lt;br /&gt;
*** By &#039;&#039;&#039;1/26&#039;&#039;&#039;, draft Chapter 1: Introduction&lt;br /&gt;
*** By &#039;&#039;&#039;2/9&#039;&#039;&#039;, draft Chapter 2: Background&lt;br /&gt;
*** By &#039;&#039;&#039;3/2&#039;&#039;&#039;, draft 2 of full document done and circulated to committee&lt;br /&gt;
*** By &#039;&#039;&#039;mid March&#039;&#039;&#039;, set defense date and time, run through the [http://cs.brown.edu/degrees/doctoral/proposal/Thesis_Proposal_Checklist.pdf thesis checklist]&lt;br /&gt;
*** By &#039;&#039;&#039;mid April&#039;&#039;&#039;, defense!&lt;br /&gt;
*** &#039;&#039;&#039;5/1&#039;&#039;&#039;: Hard deadline for dissertation submission, &amp;quot;apply to graduate&amp;quot; on Banner&lt;br /&gt;
&lt;br /&gt;
* Misc&lt;br /&gt;
** Be a helpful TA for CS237          &amp;amp;#10003;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* South Africa &lt;br /&gt;
** results create and shared&lt;br /&gt;
** include multi-fiber methods&lt;br /&gt;
* Dan pediatric bipolar&lt;br /&gt;
** complete paper writing&lt;br /&gt;
** include region segmentation methods&lt;br /&gt;
* Edinburgh&lt;br /&gt;
** make data resource paper&lt;br /&gt;
** option: multi-fiber atlas?&lt;br /&gt;
** option: reproducing aging studies, e.g. STL FBL&lt;br /&gt;
* Multi-fiber estimation &lt;br /&gt;
** Put on finishing touches on journal paper and submit&lt;br /&gt;
* Thesis writing&lt;br /&gt;
** Make some progress on introduction&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* cave running and with demos and working for may opening&lt;br /&gt;
** cavePainting, advisor, cs137 examples, VT project&lt;br /&gt;
** hw and low-level software testing/reliability plan&lt;br /&gt;
** application software development easier&lt;br /&gt;
* longer-term funding progress&lt;br /&gt;
** some specific targets for proposals: cave, cognition, expedition, brains&lt;br /&gt;
* full Bowman experiment run by Wesley and/or Johannes in Yurt&lt;br /&gt;
* good CS16&lt;br /&gt;
* keep all advisees moving along appropriately&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Johannes Novotny|Johannes]] ===&lt;br /&gt;
&lt;br /&gt;
* complete CSCI2370   Interdisciplinary Scientific Visualization&lt;br /&gt;
** get some experience working with the CAVE (and if possible YURT)&lt;br /&gt;
* complete CSCI2951-B Data-Driven Vision and Graphics&lt;br /&gt;
* complete Programming Comps&lt;br /&gt;
* collect ideas for the Research Comps (or use master thesis if possible)&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Tom Sgouros|Tom]] ===&lt;br /&gt;
&lt;br /&gt;
* wrist/thumb&lt;br /&gt;
* yurt&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Fall 2014|Fall &#039;14]]&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6574</id>
		<title>Propose your PhD</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6574"/>
		<updated>2014-12-15T21:23:27Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Examples */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{stub}}&lt;br /&gt;
&lt;br /&gt;
In the past, PhD proposals in our department have come rather late in the PhD process; often they were balanced more toward reporting extensive thesis work so far than toward actually proposing work to be done.  It may be useful to model PhD proposals that truly &#039;&#039;propose&#039;&#039; work after grant proposals.  This page collects references, guidelines, and examples for crafting a PhD proposal document early on in the thesis work.  David&#039;s vision for the proposal process is for the student&#039;s committee to be involved in three evaluations of the research:&lt;br /&gt;
# Review the proposal document before most of the work it proposes has begun; due by the end of third academic year&lt;br /&gt;
# Review the student&#039;s progress at a formal CS department-style &amp;quot;proposal&amp;quot; presentation; due by the end of fourth academic year&lt;br /&gt;
# Sign off on the student&#039;s research at the public thesis defense presentation; due by the end of fifth academic year&lt;br /&gt;
&lt;br /&gt;
The goal for timing of these events would be one year between each pair.&lt;br /&gt;
&lt;br /&gt;
== NIH-Style PhD Proposals ==&lt;br /&gt;
There are five sections in the NIH grant proposal format relevant to PhD propsals:&lt;br /&gt;
# Vision / Introduction / Summary&lt;br /&gt;
#* A (strictly) one-page summary of the context of your work, the &amp;quot;hole in the web of knowledge&amp;quot; that you perceive in this area, and what you plan to do to fill it.  The page limit seems short but you only need enough background to give a general picture; arguments to establish novelty and significance go in the &#039;&#039;Significance&#039;&#039; section, accompanied with any more specific background required to make those arguments.&lt;br /&gt;
# Contributions&lt;br /&gt;
#* An approximately one-page summary of the specific contributions you intend to make; in other words, deliverables.  Each one needs only a short blurb to describe it, but it should include a sketch of how you intend to &amp;quot;prove&amp;quot; your contribution.&lt;br /&gt;
# Significance&lt;br /&gt;
#* A longer section explaining the significance and novelty of your proposed work, along with any further background you need to provide in order to argue these points.  You need not refer to individual contributions, though that might be useful.  This section should be chock-full of references to back up your arguments.  The level of detail in the descriptions of your proposed work in this section should be between the &#039;&#039;Contributions&#039;&#039; section (where everything&#039;s high-level and you only have a page to fit it all in) and the &#039;&#039;Research Design&#039;&#039; section (where you get into the specifics of each proposed experiment); the emphasis is on impact and context rather than mechanics.&lt;br /&gt;
# Preliminary Work&lt;br /&gt;
#* For a PhD proposal, this may include published work, informal feasibility studies for your various contributions, established relationships with collaborators, or unpublished (and perhaps even unpublishable) work demonstrating your familiarity with the field.  You should try to cover everything that&#039;s relevant at all to your ability to complete the proposed research.&lt;br /&gt;
# Research Design&lt;br /&gt;
#* Talk about the specific experiments you will perform and arrange them into a timeline.  This will likely be a quite long section.&lt;br /&gt;
# References&lt;br /&gt;
&lt;br /&gt;
The &#039;&#039;Contributions&#039;&#039; section should be about one page long, and in total the &#039;&#039;Contributions&#039;&#039;, &#039;&#039;Significance&#039;&#039;, &#039;&#039;Preliminary Work&#039;&#039;, and &#039;&#039;Research Plan&#039;&#039; sections should total no more than ten pages---the NIH is strict about this, and David intends to be, too.  You may take as much space as you need for references.&lt;br /&gt;
&lt;br /&gt;
=== NIH-Style Proposal Revisions ===&lt;br /&gt;
&lt;br /&gt;
Unless you get your proposal perfect the first time around, feedback from your committee is likely to require changes at a number of levels.  You are expected to produce a revised proposal based on this feedback.  It should differ from your initial proposal as follows:&lt;br /&gt;
&lt;br /&gt;
# It will have an additional one-page introduction outlining the major criticisms together with how and where you addressed them in the revised proposal.  Typically, this introduction should not argue against a critique, but rather state how it is addressed in the revision.  Sometimes that may mean that a description in the revision is clarified.  Sometimes it means that a piece of the proposal is removed.  Sometimes it means that significant new work must be added to the proposal.  Some interaction with your committee is likely to help in crafting this introduction.&lt;br /&gt;
# The other proposal sections will be revised as outlined in the introduction.  &lt;br /&gt;
# Some mechanism for distinguishing changes (text color, change bars, etc.) must be used to show where any substantive changes were made.&lt;br /&gt;
&lt;br /&gt;
Note that the revised proposal is still subject to the 10-page limit (plus the single introduction page). &lt;br /&gt;
&lt;br /&gt;
NIH has a very similar revision process.  Their guides to writing proposals describe this, if you would like further reading.  This revision process is also very similar to the revision process at many journals.  Example of journal-paper response letters from your colleagues may be enlightening.&lt;br /&gt;
&lt;br /&gt;
=== Evaluation Rubric ===&lt;br /&gt;
David&#039;s rubric for this proposal format follows:&lt;br /&gt;
# Vision&lt;br /&gt;
#* concise&lt;br /&gt;
#* convincing&lt;br /&gt;
# Contributions&lt;br /&gt;
#* contributions clear&lt;br /&gt;
#* evaluations of contributions clear&lt;br /&gt;
# Significance&lt;br /&gt;
#* well established&lt;br /&gt;
#* assertions cited&lt;br /&gt;
#* related well to the literature&lt;br /&gt;
# Research Plan&lt;br /&gt;
#* clear&lt;br /&gt;
#* concise&lt;br /&gt;
#* appropriate scale&lt;br /&gt;
#* no wasted effort&lt;br /&gt;
#* risks identified and sized&lt;br /&gt;
#* contingencies&lt;br /&gt;
&lt;br /&gt;
=== LaTeX Templates ===&lt;br /&gt;
You can copy the files &amp;lt;tt&amp;gt;nih.cls&amp;lt;/tt&amp;gt; and &amp;lt;tt&amp;gt;prop.tex&amp;lt;/tt&amp;gt; in &amp;lt;tt&amp;gt;/pro/graphics/proposals/nih/bisti&amp;lt;/tt&amp;gt; to serve as templates for your proposal, but please don&#039;t modify the originals.&lt;br /&gt;
&lt;br /&gt;
=== Examples ===&lt;br /&gt;
* [[Jadrian Miles]]&#039;s diffusion MRI proposals:&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf‎|Initial proposal]], submitted to his committee summer 2009&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Second revision]], prepared fall 2009 in response to committee comments&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev3 2010-09-10.pdf|Third revision, dissertation-with-holes-style]], submitted to the department September 2010&lt;br /&gt;
* [http://cs.brown.edu/~wzhou/proposal_wzhou.pdf Wenjin Zhou&#039;s initial diffusion MRI proposal], submitted to her committee summer 2009&lt;br /&gt;
* [[User:Steven_Gomez#NIH-style_Proposal_Drafts | Steven Gomez&#039;s initial proposal]], submitted to dhl in spring 2012&lt;br /&gt;
* [[:File:Cabeen_thesis_proposal.pdf | Ryan Cabeen&#039;s thesis proposal]], submitted to committee November 2014&lt;br /&gt;
&lt;br /&gt;
== Grant Proposals ==&lt;br /&gt;
&lt;br /&gt;
Since this brave new world of authentic PhD research proposals is supposed to be modeled after the grant proposal and review process, check out &#039;&#039;[[Write a grant proposal]]&#039;&#039; for more information and examples of how real grant proposals are constructed.&lt;br /&gt;
&lt;br /&gt;
== Older PhD Proposal Examples ==&lt;br /&gt;
&lt;br /&gt;
Most of these example PhD &amp;quot;proposals&amp;quot; from previous years are proposals in the CS department sense: they report on a large body of completed work and propose the completion of the dissertation research.  Some are from biomed, where the format is more similar to David&#039;s.&lt;br /&gt;
&lt;br /&gt;
* [[:Image:Dan Keefe PhD proposal.pdf|Dan Keefe&#039;s visualization PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Tomer Moscovich PhD proposal.pdf|Tomer Moscovich&#039;s graphics PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Daf phd proposal.pdf|Daniel Acevedo&#039;s visualization PhD proposal]] from 2006 ([[:Image:Daf phd proposal presentation.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Dana Tenneson phd proposal.pdf|Dana Tenneson&#039;s graphics PhD proposal]] from 2007 ([[:Image:Dana Tenneson phd proposal talk.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Example biomed-eng PhD proposal by awald.pdf|Andy Wald&#039;s biomedical engineering PhD proposal]] from 2007&lt;br /&gt;
* [[:Image:Evan Leventhal PhD proposal.pdf|Evan Leventhal&#039;s biomedical engineering PhD proposal]] from 2008&lt;br /&gt;
* [[:Image:Pepe&#039;s proposal.pdf|Pepe&#039;s ecology &amp;amp; evolutionary biology PhD proposal]]&lt;br /&gt;
&lt;br /&gt;
[[Category:HOWTO]][[Category:The PhD Process]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6573</id>
		<title>Propose your PhD</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6573"/>
		<updated>2014-12-15T21:19:50Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Examples */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{stub}}&lt;br /&gt;
&lt;br /&gt;
In the past, PhD proposals in our department have come rather late in the PhD process; often they were balanced more toward reporting extensive thesis work so far than toward actually proposing work to be done.  It may be useful to model PhD proposals that truly &#039;&#039;propose&#039;&#039; work after grant proposals.  This page collects references, guidelines, and examples for crafting a PhD proposal document early on in the thesis work.  David&#039;s vision for the proposal process is for the student&#039;s committee to be involved in three evaluations of the research:&lt;br /&gt;
# Review the proposal document before most of the work it proposes has begun; due by the end of third academic year&lt;br /&gt;
# Review the student&#039;s progress at a formal CS department-style &amp;quot;proposal&amp;quot; presentation; due by the end of fourth academic year&lt;br /&gt;
# Sign off on the student&#039;s research at the public thesis defense presentation; due by the end of fifth academic year&lt;br /&gt;
&lt;br /&gt;
The goal for timing of these events would be one year between each pair.&lt;br /&gt;
&lt;br /&gt;
== NIH-Style PhD Proposals ==&lt;br /&gt;
There are five sections in the NIH grant proposal format relevant to PhD propsals:&lt;br /&gt;
# Vision / Introduction / Summary&lt;br /&gt;
#* A (strictly) one-page summary of the context of your work, the &amp;quot;hole in the web of knowledge&amp;quot; that you perceive in this area, and what you plan to do to fill it.  The page limit seems short but you only need enough background to give a general picture; arguments to establish novelty and significance go in the &#039;&#039;Significance&#039;&#039; section, accompanied with any more specific background required to make those arguments.&lt;br /&gt;
# Contributions&lt;br /&gt;
#* An approximately one-page summary of the specific contributions you intend to make; in other words, deliverables.  Each one needs only a short blurb to describe it, but it should include a sketch of how you intend to &amp;quot;prove&amp;quot; your contribution.&lt;br /&gt;
# Significance&lt;br /&gt;
#* A longer section explaining the significance and novelty of your proposed work, along with any further background you need to provide in order to argue these points.  You need not refer to individual contributions, though that might be useful.  This section should be chock-full of references to back up your arguments.  The level of detail in the descriptions of your proposed work in this section should be between the &#039;&#039;Contributions&#039;&#039; section (where everything&#039;s high-level and you only have a page to fit it all in) and the &#039;&#039;Research Design&#039;&#039; section (where you get into the specifics of each proposed experiment); the emphasis is on impact and context rather than mechanics.&lt;br /&gt;
# Preliminary Work&lt;br /&gt;
#* For a PhD proposal, this may include published work, informal feasibility studies for your various contributions, established relationships with collaborators, or unpublished (and perhaps even unpublishable) work demonstrating your familiarity with the field.  You should try to cover everything that&#039;s relevant at all to your ability to complete the proposed research.&lt;br /&gt;
# Research Design&lt;br /&gt;
#* Talk about the specific experiments you will perform and arrange them into a timeline.  This will likely be a quite long section.&lt;br /&gt;
# References&lt;br /&gt;
&lt;br /&gt;
The &#039;&#039;Contributions&#039;&#039; section should be about one page long, and in total the &#039;&#039;Contributions&#039;&#039;, &#039;&#039;Significance&#039;&#039;, &#039;&#039;Preliminary Work&#039;&#039;, and &#039;&#039;Research Plan&#039;&#039; sections should total no more than ten pages---the NIH is strict about this, and David intends to be, too.  You may take as much space as you need for references.&lt;br /&gt;
&lt;br /&gt;
=== NIH-Style Proposal Revisions ===&lt;br /&gt;
&lt;br /&gt;
Unless you get your proposal perfect the first time around, feedback from your committee is likely to require changes at a number of levels.  You are expected to produce a revised proposal based on this feedback.  It should differ from your initial proposal as follows:&lt;br /&gt;
&lt;br /&gt;
# It will have an additional one-page introduction outlining the major criticisms together with how and where you addressed them in the revised proposal.  Typically, this introduction should not argue against a critique, but rather state how it is addressed in the revision.  Sometimes that may mean that a description in the revision is clarified.  Sometimes it means that a piece of the proposal is removed.  Sometimes it means that significant new work must be added to the proposal.  Some interaction with your committee is likely to help in crafting this introduction.&lt;br /&gt;
# The other proposal sections will be revised as outlined in the introduction.  &lt;br /&gt;
# Some mechanism for distinguishing changes (text color, change bars, etc.) must be used to show where any substantive changes were made.&lt;br /&gt;
&lt;br /&gt;
Note that the revised proposal is still subject to the 10-page limit (plus the single introduction page). &lt;br /&gt;
&lt;br /&gt;
NIH has a very similar revision process.  Their guides to writing proposals describe this, if you would like further reading.  This revision process is also very similar to the revision process at many journals.  Example of journal-paper response letters from your colleagues may be enlightening.&lt;br /&gt;
&lt;br /&gt;
=== Evaluation Rubric ===&lt;br /&gt;
David&#039;s rubric for this proposal format follows:&lt;br /&gt;
# Vision&lt;br /&gt;
#* concise&lt;br /&gt;
#* convincing&lt;br /&gt;
# Contributions&lt;br /&gt;
#* contributions clear&lt;br /&gt;
#* evaluations of contributions clear&lt;br /&gt;
# Significance&lt;br /&gt;
#* well established&lt;br /&gt;
#* assertions cited&lt;br /&gt;
#* related well to the literature&lt;br /&gt;
# Research Plan&lt;br /&gt;
#* clear&lt;br /&gt;
#* concise&lt;br /&gt;
#* appropriate scale&lt;br /&gt;
#* no wasted effort&lt;br /&gt;
#* risks identified and sized&lt;br /&gt;
#* contingencies&lt;br /&gt;
&lt;br /&gt;
=== LaTeX Templates ===&lt;br /&gt;
You can copy the files &amp;lt;tt&amp;gt;nih.cls&amp;lt;/tt&amp;gt; and &amp;lt;tt&amp;gt;prop.tex&amp;lt;/tt&amp;gt; in &amp;lt;tt&amp;gt;/pro/graphics/proposals/nih/bisti&amp;lt;/tt&amp;gt; to serve as templates for your proposal, but please don&#039;t modify the originals.&lt;br /&gt;
&lt;br /&gt;
=== Examples ===&lt;br /&gt;
* [[Jadrian Miles]]&#039;s diffusion MRI proposals:&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf‎|Initial proposal]], submitted to his committee summer 2009&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Second revision]], prepared fall 2009 in response to committee comments&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev3 2010-09-10.pdf|Third revision, dissertation-with-holes-style]], submitted to the department September 2010&lt;br /&gt;
* [http://cs.brown.edu/~wzhou/proposal_wzhou.pdf Wenjin Zhou&#039;s initial diffusion MRI proposal], submitted to her committee summer 2009&lt;br /&gt;
* [[User:Steven_Gomez#NIH-style_Proposal_Drafts | Steven Gomez&#039;s initial proposal]], submitted to dhl in spring 2012&lt;br /&gt;
* [[http://vrl.cs.brown.edu/wiki/File:Cabeen_thesis_proposal.pdf | Ryan Cabeen&#039;s thesis proposal]], submitted to committee November 2014&lt;br /&gt;
&lt;br /&gt;
== Grant Proposals ==&lt;br /&gt;
&lt;br /&gt;
Since this brave new world of authentic PhD research proposals is supposed to be modeled after the grant proposal and review process, check out &#039;&#039;[[Write a grant proposal]]&#039;&#039; for more information and examples of how real grant proposals are constructed.&lt;br /&gt;
&lt;br /&gt;
== Older PhD Proposal Examples ==&lt;br /&gt;
&lt;br /&gt;
Most of these example PhD &amp;quot;proposals&amp;quot; from previous years are proposals in the CS department sense: they report on a large body of completed work and propose the completion of the dissertation research.  Some are from biomed, where the format is more similar to David&#039;s.&lt;br /&gt;
&lt;br /&gt;
* [[:Image:Dan Keefe PhD proposal.pdf|Dan Keefe&#039;s visualization PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Tomer Moscovich PhD proposal.pdf|Tomer Moscovich&#039;s graphics PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Daf phd proposal.pdf|Daniel Acevedo&#039;s visualization PhD proposal]] from 2006 ([[:Image:Daf phd proposal presentation.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Dana Tenneson phd proposal.pdf|Dana Tenneson&#039;s graphics PhD proposal]] from 2007 ([[:Image:Dana Tenneson phd proposal talk.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Example biomed-eng PhD proposal by awald.pdf|Andy Wald&#039;s biomedical engineering PhD proposal]] from 2007&lt;br /&gt;
* [[:Image:Evan Leventhal PhD proposal.pdf|Evan Leventhal&#039;s biomedical engineering PhD proposal]] from 2008&lt;br /&gt;
* [[:Image:Pepe&#039;s proposal.pdf|Pepe&#039;s ecology &amp;amp; evolutionary biology PhD proposal]]&lt;br /&gt;
&lt;br /&gt;
[[Category:HOWTO]][[Category:The PhD Process]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=File:Cabeen_thesis_proposal.pdf&amp;diff=6572</id>
		<title>File:Cabeen thesis proposal.pdf</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=File:Cabeen_thesis_proposal.pdf&amp;diff=6572"/>
		<updated>2014-12-15T21:19:05Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: Ryan Cabeen&amp;#039;s thesis proposal on diffusion MR image analysis.  Submitted to committee in November 2014&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Ryan Cabeen&#039;s thesis proposal on diffusion MR image analysis.  Submitted to committee in November 2014&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6534</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6534"/>
		<updated>2014-09-02T15:48:15Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Fall &#039;14) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve (Summer)]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* Complete thesis proposal&lt;br /&gt;
** Form committee&lt;br /&gt;
** Give proposal talk&lt;br /&gt;
* Work on papers&lt;br /&gt;
** Submit bipolar paper with Dan&lt;br /&gt;
** Contribute to Fauxvea work&lt;br /&gt;
* Continue work on neuroimaging collabs&lt;br /&gt;
** Send quality checks for second timepoint STL data&lt;br /&gt;
** Run image analysis for STL and SA studies&lt;br /&gt;
** Maintain relationship with folks at RIH&lt;br /&gt;
** Contribute to pubs from Rob Paul&#039;s group&lt;br /&gt;
* Thesis work&lt;br /&gt;
** Run experiments comparing methods&lt;br /&gt;
** Write TMI paper on multi-fiber processing&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals/Spring-Summer_2014&amp;diff=6533</id>
		<title>Plans and Goals/Spring-Summer 2014</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals/Spring-Summer_2014&amp;diff=6533"/>
		<updated>2014-09-02T15:37:49Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: Created page with &amp;quot;== Current Plans and Goals (Spring &amp;#039;14) ==  === Connor === * &amp;#039;&amp;#039;&amp;#039;Take Jeff&amp;#039;s HCI Seminar&amp;#039;&amp;#039;&amp;#039; ** Work no more than 6 hours outside of class every week  *...&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;== Current Plans and Goals (Spring &#039;14) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
* &#039;&#039;&#039;Take Jeff&#039;s HCI Seminar&#039;&#039;&#039;&lt;br /&gt;
** Work no more than 6 hours outside of class every week&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Successfully defend research comp&#039;&#039;&#039;&lt;br /&gt;
** February 21: Complete first draft of manuscript&lt;br /&gt;
** February 28: Finish slides, complete polished manuscript&lt;br /&gt;
** March 6: Defend&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Complete Perception Study&#039;&#039;&#039;&lt;br /&gt;
** February 7: Have data for 12 subjects&lt;br /&gt;
** Tie in results to research comp as listed above&lt;br /&gt;
** March 21: Submit abstract&lt;br /&gt;
** March 31: Submit a great paper to InfoVis&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Complete GD3 viz library and web analysis tool&#039;&#039;&#039;&lt;br /&gt;
** Decide strategy for long-form publication of both viz library and web analysis tool&lt;br /&gt;
** By end of January: Complete GD3 viz library code cleanup&lt;br /&gt;
** By mid-February: Complete the web analysis tool&lt;br /&gt;
** By end of February: work with Max to submit a Technical Note to Bioinformatics&lt;br /&gt;
** Tie in results to research comp as listed above&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Start interaction logging&#039;&#039;&#039;: cancer genomics tool&lt;br /&gt;
** By mid-February: have GD3 library and web service completed&lt;br /&gt;
** January 31: Write paper outline, particularly focusing on experiment methodology (how many subjects, study conditions, etc.)&lt;br /&gt;
** February 11: Have interaction logging fully built into the tool&lt;br /&gt;
** February 14: Run myself through tool, check if logs look ok&lt;br /&gt;
** February 21: Run 3 others through tool and record other material (e.g., video)&lt;br /&gt;
** February 28: Tie in preliminary results to research comp as listed above&lt;br /&gt;
** Post-March: dependent on above decision; if submitting to CHI, focus on additional experiments&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Present at IPP Symposium on Social Computing&#039;&#039;&#039;&lt;br /&gt;
** Present cancer genomics work&lt;br /&gt;
** Present quantified self work&lt;br /&gt;
&lt;br /&gt;
* Have a written agenda for every meeting&lt;br /&gt;
* Put quantified self project on the back burner until after VIS submission&lt;br /&gt;
** 1hr/week MAX until after VIS&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Improve the prototype to qualify for a submission&lt;br /&gt;
** Submit&lt;br /&gt;
** Getting it out in the wild&lt;br /&gt;
*** Reconnect with neuroscientists here at Brown&lt;br /&gt;
*** Reach out to Allen Brain Institute and Neuroscience Information Framework&lt;br /&gt;
* Network edge uncertainty visualization&lt;br /&gt;
** Draft paper with everything except final analysis results (&#039;&#039;&#039;Jan. 24&#039;&#039;&#039;)&lt;br /&gt;
** Finish running users (&#039;&#039;&#039;Feb. 7&#039;&#039;&#039;)&lt;br /&gt;
** Submit to InfoVis (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Aptima&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Perform temporal analysis on the data (&#039;&#039;&#039;Jan. 31&#039;&#039;&#039;)&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Find committee members&lt;br /&gt;
** Finish a draft that has&lt;br /&gt;
*** a realistic timeline from now until defense&lt;br /&gt;
*** detailed plan for at least one paper that could be part of the thesis&lt;br /&gt;
* Research-related skills&lt;br /&gt;
** Attend an experimental design workshop&lt;br /&gt;
** Take a course on creative writing&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve (Summer)]] ===&lt;br /&gt;
&lt;br /&gt;
* Crowd-eyetracking paper for TVCG&lt;br /&gt;
** Collate recommendations and issues from InfoVis submission, and prepare plan for TVCG resubmission by &#039;&#039;&#039;6/10&#039;&#039;&#039;&lt;br /&gt;
** Submit to TVCG by &#039;&#039;&#039;end of summer&#039;&#039;&#039;&lt;br /&gt;
** Meet with Radu by &#039;&#039;&#039;mid-June&#039;&#039;&#039; to talk about next steps with evaluation&lt;br /&gt;
&lt;br /&gt;
* Individual-differences analysis&lt;br /&gt;
** Write up analysis on the relationship between CRT and visualization analysis by &#039;&#039;&#039;6/10&#039;&#039;&#039;&lt;br /&gt;
** Meet with Steve Sloman to discuss CRT, follow-up&lt;br /&gt;
** Consider submitting to BELIV workshop, deadline on &#039;&#039;&#039;6/30&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Aptima project&lt;br /&gt;
** Follow-up VAST paper as needed (still waiting on reviews)&lt;br /&gt;
** Consider submitting to BELIV workshop if rejected from VAST (&#039;&#039;&#039;6/30&#039;&#039;&#039;)&lt;br /&gt;
** Read specification for VAST Challenge 2014&lt;br /&gt;
** Contribute to evaluation of AARDVARK system&lt;br /&gt;
&lt;br /&gt;
* Dissertation write-up and misc.&lt;br /&gt;
** Draft teaching statement (&#039;&#039;&#039;7/15&#039;&#039;&#039;)&lt;br /&gt;
** Draft background chapter and outline for dissertation in Latex (&#039;&#039;&#039;7/30&#039;&#039;&#039;)&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* Complete thesis proposal&lt;br /&gt;
* Work on papers&lt;br /&gt;
** Submit a great MICCAI paper (end of Feb)&lt;br /&gt;
** Contribute to Fauxvea infovis submission (end of March)&lt;br /&gt;
* Continue work on neuroimaging collabs&lt;br /&gt;
** Finalize analysis for South Africa analysis&lt;br /&gt;
** Run connectivity analysis with St Louis data&lt;br /&gt;
** Maintain relationship with folks at RIH&lt;br /&gt;
* Complete work outlined in proposal for this term&lt;br /&gt;
** Aim 1 framework developed and submitted&lt;br /&gt;
** Aim 2 code partially developed&lt;br /&gt;
** Aim 3 studies run and progress made on papers&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6532</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6532"/>
		<updated>2014-09-02T15:37:27Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;14) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
* &#039;&#039;&#039;Take Jeff&#039;s HCI Seminar&#039;&#039;&#039;&lt;br /&gt;
** Work no more than 6 hours outside of class every week&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Successfully defend research comp&#039;&#039;&#039;&lt;br /&gt;
** February 21: Complete first draft of manuscript&lt;br /&gt;
** February 28: Finish slides, complete polished manuscript&lt;br /&gt;
** March 6: Defend&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Complete Perception Study&#039;&#039;&#039;&lt;br /&gt;
** February 7: Have data for 12 subjects&lt;br /&gt;
** Tie in results to research comp as listed above&lt;br /&gt;
** March 21: Submit abstract&lt;br /&gt;
** March 31: Submit a great paper to InfoVis&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Complete GD3 viz library and web analysis tool&#039;&#039;&#039;&lt;br /&gt;
** Decide strategy for long-form publication of both viz library and web analysis tool&lt;br /&gt;
** By end of January: Complete GD3 viz library code cleanup&lt;br /&gt;
** By mid-February: Complete the web analysis tool&lt;br /&gt;
** By end of February: work with Max to submit a Technical Note to Bioinformatics&lt;br /&gt;
** Tie in results to research comp as listed above&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Start interaction logging&#039;&#039;&#039;: cancer genomics tool&lt;br /&gt;
** By mid-February: have GD3 library and web service completed&lt;br /&gt;
** January 31: Write paper outline, particularly focusing on experiment methodology (how many subjects, study conditions, etc.)&lt;br /&gt;
** February 11: Have interaction logging fully built into the tool&lt;br /&gt;
** February 14: Run myself through tool, check if logs look ok&lt;br /&gt;
** February 21: Run 3 others through tool and record other material (e.g., video)&lt;br /&gt;
** February 28: Tie in preliminary results to research comp as listed above&lt;br /&gt;
** Post-March: dependent on above decision; if submitting to CHI, focus on additional experiments&lt;br /&gt;
&lt;br /&gt;
* &#039;&#039;&#039;Present at IPP Symposium on Social Computing&#039;&#039;&#039;&lt;br /&gt;
** Present cancer genomics work&lt;br /&gt;
** Present quantified self work&lt;br /&gt;
&lt;br /&gt;
* Have a written agenda for every meeting&lt;br /&gt;
* Put quantified self project on the back burner until after VIS submission&lt;br /&gt;
** 1hr/week MAX until after VIS&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Improve the prototype to qualify for a submission&lt;br /&gt;
** Submit&lt;br /&gt;
** Getting it out in the wild&lt;br /&gt;
*** Reconnect with neuroscientists here at Brown&lt;br /&gt;
*** Reach out to Allen Brain Institute and Neuroscience Information Framework&lt;br /&gt;
* Network edge uncertainty visualization&lt;br /&gt;
** Draft paper with everything except final analysis results (&#039;&#039;&#039;Jan. 24&#039;&#039;&#039;)&lt;br /&gt;
** Finish running users (&#039;&#039;&#039;Feb. 7&#039;&#039;&#039;)&lt;br /&gt;
** Submit to InfoVis (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Aptima&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Perform temporal analysis on the data (&#039;&#039;&#039;Jan. 31&#039;&#039;&#039;)&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Find committee members&lt;br /&gt;
** Finish a draft that has&lt;br /&gt;
*** a realistic timeline from now until defense&lt;br /&gt;
*** detailed plan for at least one paper that could be part of the thesis&lt;br /&gt;
* Research-related skills&lt;br /&gt;
** Attend an experimental design workshop&lt;br /&gt;
** Take a course on creative writing&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve (Summer)]] ===&lt;br /&gt;
&lt;br /&gt;
* Crowd-eyetracking paper for TVCG&lt;br /&gt;
** Collate recommendations and issues from InfoVis submission, and prepare plan for TVCG resubmission by &#039;&#039;&#039;6/10&#039;&#039;&#039;&lt;br /&gt;
** Submit to TVCG by &#039;&#039;&#039;end of summer&#039;&#039;&#039;&lt;br /&gt;
** Meet with Radu by &#039;&#039;&#039;mid-June&#039;&#039;&#039; to talk about next steps with evaluation&lt;br /&gt;
&lt;br /&gt;
* Individual-differences analysis&lt;br /&gt;
** Write up analysis on the relationship between CRT and visualization analysis by &#039;&#039;&#039;6/10&#039;&#039;&#039;&lt;br /&gt;
** Meet with Steve Sloman to discuss CRT, follow-up&lt;br /&gt;
** Consider submitting to BELIV workshop, deadline on &#039;&#039;&#039;6/30&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Aptima project&lt;br /&gt;
** Follow-up VAST paper as needed (still waiting on reviews)&lt;br /&gt;
** Consider submitting to BELIV workshop if rejected from VAST (&#039;&#039;&#039;6/30&#039;&#039;&#039;)&lt;br /&gt;
** Read specification for VAST Challenge 2014&lt;br /&gt;
** Contribute to evaluation of AARDVARK system&lt;br /&gt;
&lt;br /&gt;
* Dissertation write-up and misc.&lt;br /&gt;
** Draft teaching statement (&#039;&#039;&#039;7/15&#039;&#039;&#039;)&lt;br /&gt;
** Draft background chapter and outline for dissertation in Latex (&#039;&#039;&#039;7/30&#039;&#039;&#039;)&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* Complete thesis proposal&lt;br /&gt;
* Work on papers&lt;br /&gt;
** Submit a great MICCAI paper (end of Feb)&lt;br /&gt;
** Contribute to Fauxvea infovis submission (end of March)&lt;br /&gt;
* Continue work on neuroimaging collabs&lt;br /&gt;
** Finalize analysis for South Africa analysis&lt;br /&gt;
** Run connectivity analysis with St Louis data&lt;br /&gt;
** Maintain relationship with folks at RIH&lt;br /&gt;
* Complete work outlined in proposal for this term&lt;br /&gt;
** Aim 1 framework developed and submitted&lt;br /&gt;
** Aim 2 code partially developed&lt;br /&gt;
** Aim 3 studies run and progress made on papers&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring-Summer 2014|Spring-Summer &#039;14]]&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Write_a_grant_proposal&amp;diff=6530</id>
		<title>Write a grant proposal</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Write_a_grant_proposal&amp;diff=6530"/>
		<updated>2014-05-29T15:48:03Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Most research is funded through grants, and to get a grant, you must write a grant proposal.  Our group generally finds funding through the NIH (National Institutes of Health) and the NSF (National Science Foundation), which have distinct and well-known grant proposal styles.  Collected here are links to guidelines and examples for writing grants in these styles.&lt;br /&gt;
&lt;br /&gt;
== NIH ==&lt;br /&gt;
&lt;br /&gt;
* [http://vis.cs.brown.edu/docs/pdf/bib/NIH-2001-PHS.pdf NIH guide to proposals]&lt;br /&gt;
* Example proposal: &#039;&#039;DTI+MRI-based Tools for Analyzing White Matter Variation&#039;&#039; by Laidlaw, Ahrens, Allman, and Bastin&lt;br /&gt;
*# [http://vis.cs.brown.edu/docs/pdf/bib/Laidlaw-2004-DTI.pdf First submission]&lt;br /&gt;
*# [http://vis.cs.brown.edu/docs/pdf/bib/NIH-2004-DTI.pdf NIH Reviews]&lt;br /&gt;
*# [http://vis.cs.brown.edu/docs/pdf/bib/Laidlaw-2004-DA1.pdf Revision A1], in response to the first round of reviews&lt;br /&gt;
*# [http://vis.cs.brown.edu/docs/pdf/bib/NIH-2004-DRV.PDF NIH Reviews of the revised proposal]&lt;br /&gt;
*# [http://vis.cs.brown.edu/docs/pdf/bib/Laidlaw-2005-DA2.pdf Revision A2], in response to the second round of reviews&lt;br /&gt;
* Additional tips: [http://www.ninds.nih.gov/funding/write_grant_doc.htm How to Write a Research Project Grant Application]&lt;br /&gt;
&lt;br /&gt;
=== LaTeX Templates ===&lt;br /&gt;
You can copy the files &amp;lt;tt&amp;gt;nih.cls&amp;lt;/tt&amp;gt; and &amp;lt;tt&amp;gt;prop.tex&amp;lt;/tt&amp;gt; in &amp;lt;tt&amp;gt;/pro/graphics/proposals/nih/bisti&amp;lt;/tt&amp;gt; to serve as templates for your proposal, but please don&#039;t modify the originals.&lt;br /&gt;
&lt;br /&gt;
== NSF ==&lt;br /&gt;
* [http://vis.cs.brown.edu/docs/pdf/NSF-2004-GPG.pdf NSF grant proposal guide]&lt;br /&gt;
* [http://vis.cs.brown.edu/docs/pdf/NSF-2004-GPW.pdf NSF guide to proposal writing]&lt;br /&gt;
* [http://www.cs.wustl.edu/~cmg/NSF/nsf.html Cindy Grimm&#039;s user-friendly NSF grant proposal guide]&lt;br /&gt;
&lt;br /&gt;
[[Category:HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6529</id>
		<title>Propose your PhD</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6529"/>
		<updated>2014-05-29T15:47:36Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{stub}}&lt;br /&gt;
&lt;br /&gt;
In the past, PhD proposals in our department have come rather late in the PhD process; often they were balanced more toward reporting extensive thesis work so far than toward actually proposing work to be done.  It may be useful to model PhD proposals that truly &#039;&#039;propose&#039;&#039; work after grant proposals.  This page collects references, guidelines, and examples for crafting a PhD proposal document early on in the thesis work.  David&#039;s vision for the proposal process is for the student&#039;s committee to be involved in three evaluations of the research:&lt;br /&gt;
# Review the proposal document before most of the work it proposes has begun; due by the end of third academic year&lt;br /&gt;
# Review the student&#039;s progress at a formal CS department-style &amp;quot;proposal&amp;quot; presentation; due by the end of fourth academic year&lt;br /&gt;
# Sign off on the student&#039;s research at the public thesis defense presentation; due by the end of fifth academic year&lt;br /&gt;
&lt;br /&gt;
The goal for timing of these events would be one year between each pair.&lt;br /&gt;
&lt;br /&gt;
== NIH-Style PhD Proposals ==&lt;br /&gt;
There are five sections in the NIH grant proposal format relevant to PhD propsals:&lt;br /&gt;
# Vision / Introduction / Summary&lt;br /&gt;
#* A (strictly) one-page summary of the context of your work, the &amp;quot;hole in the web of knowledge&amp;quot; that you perceive in this area, and what you plan to do to fill it.  The page limit seems short but you only need enough background to give a general picture; arguments to establish novelty and significance go in the &#039;&#039;Significance&#039;&#039; section, accompanied with any more specific background required to make those arguments.&lt;br /&gt;
# Contributions&lt;br /&gt;
#* An approximately one-page summary of the specific contributions you intend to make; in other words, deliverables.  Each one needs only a short blurb to describe it, but it should include a sketch of how you intend to &amp;quot;prove&amp;quot; your contribution.&lt;br /&gt;
# Significance&lt;br /&gt;
#* A longer section explaining the significance and novelty of your proposed work, along with any further background you need to provide in order to argue these points.  You need not refer to individual contributions, though that might be useful.  This section should be chock-full of references to back up your arguments.  The level of detail in the descriptions of your proposed work in this section should be between the &#039;&#039;Contributions&#039;&#039; section (where everything&#039;s high-level and you only have a page to fit it all in) and the &#039;&#039;Research Design&#039;&#039; section (where you get into the specifics of each proposed experiment); the emphasis is on impact and context rather than mechanics.&lt;br /&gt;
# Preliminary Work&lt;br /&gt;
#* For a PhD proposal, this may include published work, informal feasibility studies for your various contributions, established relationships with collaborators, or unpublished (and perhaps even unpublishable) work demonstrating your familiarity with the field.  You should try to cover everything that&#039;s relevant at all to your ability to complete the proposed research.&lt;br /&gt;
# Research Design&lt;br /&gt;
#* Talk about the specific experiments you will perform and arrange them into a timeline.  This will likely be a quite long section.&lt;br /&gt;
# References&lt;br /&gt;
&lt;br /&gt;
The &#039;&#039;Contributions&#039;&#039; section should be about one page long, and in total the &#039;&#039;Contributions&#039;&#039;, &#039;&#039;Significance&#039;&#039;, &#039;&#039;Preliminary Work&#039;&#039;, and &#039;&#039;Research Plan&#039;&#039; sections should total no more than ten pages---the NIH is strict about this, and David intends to be, too.  You may take as much space as you need for references.&lt;br /&gt;
&lt;br /&gt;
=== NIH-Style Proposal Revisions ===&lt;br /&gt;
&lt;br /&gt;
Unless you get your proposal perfect the first time around, feedback from your committee is likely to require changes at a number of levels.  You are expected to produce a revised proposal based on this feedback.  It should differ from your initial proposal as follows:&lt;br /&gt;
&lt;br /&gt;
# It will have an additional one-page introduction outlining the major criticisms together with how and where you addressed them in the revised proposal.  Typically, this introduction should not argue against a critique, but rather state how it is addressed in the revision.  Sometimes that may mean that a description in the revision is clarified.  Sometimes it means that a piece of the proposal is removed.  Sometimes it means that significant new work must be added to the proposal.  Some interaction with your committee is likely to help in crafting this introduction.&lt;br /&gt;
# The other proposal sections will be revised as outlined in the introduction.  &lt;br /&gt;
# Some mechanism for distinguishing changes (text color, change bars, etc.) must be used to show where any substantive changes were made.&lt;br /&gt;
&lt;br /&gt;
Note that the revised proposal is still subject to the 10-page limit (plus the single introduction page). &lt;br /&gt;
&lt;br /&gt;
NIH has a very similar revision process.  Their guides to writing proposals describe this, if you would like further reading.  This revision process is also very similar to the revision process at many journals.  Example of journal-paper response letters from your colleagues may be enlightening.&lt;br /&gt;
&lt;br /&gt;
=== Evaluation Rubric ===&lt;br /&gt;
David&#039;s rubric for this proposal format follows:&lt;br /&gt;
# Vision&lt;br /&gt;
#* concise&lt;br /&gt;
#* convincing&lt;br /&gt;
# Contributions&lt;br /&gt;
#* contributions clear&lt;br /&gt;
#* evaluations of contributions clear&lt;br /&gt;
# Significance&lt;br /&gt;
#* well established&lt;br /&gt;
#* assertions cited&lt;br /&gt;
#* related well to the literature&lt;br /&gt;
# Research Plan&lt;br /&gt;
#* clear&lt;br /&gt;
#* concise&lt;br /&gt;
#* appropriate scale&lt;br /&gt;
#* no wasted effort&lt;br /&gt;
#* risks identified and sized&lt;br /&gt;
#* contingencies&lt;br /&gt;
&lt;br /&gt;
=== LaTeX Templates ===&lt;br /&gt;
You can copy the files &amp;lt;tt&amp;gt;nih.cls&amp;lt;/tt&amp;gt; and &amp;lt;tt&amp;gt;prop.tex&amp;lt;/tt&amp;gt; in &amp;lt;tt&amp;gt;/pro/graphics/proposals/nih/bisti&amp;lt;/tt&amp;gt; to serve as templates for your proposal, but please don&#039;t modify the originals.&lt;br /&gt;
&lt;br /&gt;
=== Examples ===&lt;br /&gt;
* [[Jadrian Miles]]&#039;s diffusion MRI proposals:&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf‎|Initial proposal]], submitted to his committee summer 2009&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Second revision]], prepared fall 2009 in response to committee comments&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev3 2010-09-10.pdf|Third revision, dissertation-with-holes-style]], submitted to the department September 2010&lt;br /&gt;
* [http://cs.brown.edu/~wzhou/proposal_wzhou.pdf Wenjin Zhou&#039;s initial diffusion MRI proposal], submitted to her committee summer 2009&lt;br /&gt;
* [[User:Steven_Gomez#NIH-style_Proposal_Drafts | Steven Gomez&#039;s initial proposal]], submitted to dhl in spring 2012&lt;br /&gt;
&lt;br /&gt;
== Grant Proposals ==&lt;br /&gt;
&lt;br /&gt;
Since this brave new world of authentic PhD research proposals is supposed to be modeled after the grant proposal and review process, check out &#039;&#039;[[Write a grant proposal]]&#039;&#039; for more information and examples of how real grant proposals are constructed.&lt;br /&gt;
&lt;br /&gt;
== Older PhD Proposal Examples ==&lt;br /&gt;
&lt;br /&gt;
Most of these example PhD &amp;quot;proposals&amp;quot; from previous years are proposals in the CS department sense: they report on a large body of completed work and propose the completion of the dissertation research.  Some are from biomed, where the format is more similar to David&#039;s.&lt;br /&gt;
&lt;br /&gt;
* [[:Image:Dan Keefe PhD proposal.pdf|Dan Keefe&#039;s visualization PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Tomer Moscovich PhD proposal.pdf|Tomer Moscovich&#039;s graphics PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Daf phd proposal.pdf|Daniel Acevedo&#039;s visualization PhD proposal]] from 2006 ([[:Image:Daf phd proposal presentation.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Dana Tenneson phd proposal.pdf|Dana Tenneson&#039;s graphics PhD proposal]] from 2007 ([[:Image:Dana Tenneson phd proposal talk.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Example biomed-eng PhD proposal by awald.pdf|Andy Wald&#039;s biomedical engineering PhD proposal]] from 2007&lt;br /&gt;
* [[:Image:Evan Leventhal PhD proposal.pdf|Evan Leventhal&#039;s biomedical engineering PhD proposal]] from 2008&lt;br /&gt;
* [[:Image:Pepe&#039;s proposal.pdf|Pepe&#039;s ecology &amp;amp; evolutionary biology PhD proposal]]&lt;br /&gt;
&lt;br /&gt;
[[Category:HOWTO]][[Category:The PhD Process]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6528</id>
		<title>Propose your PhD</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Propose_your_PhD&amp;diff=6528"/>
		<updated>2014-05-29T15:46:25Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{stub}}&lt;br /&gt;
&lt;br /&gt;
In the past, PhD proposals in our department have come rather late in the PhD process; often they were balanced more toward reporting extensive thesis work so far than toward actually proposing work to be done.  It may be useful to model PhD proposals that truly &#039;&#039;propose&#039;&#039; work after grant proposals.  This page collects references, guidelines, and examples for crafting a PhD proposal document early on in the thesis work.  David&#039;s vision for the proposal process is for the student&#039;s committee to be involved in three evaluations of the research:&lt;br /&gt;
# Review the proposal document before most of the work it proposes has begun; due by the end of third academic year&lt;br /&gt;
# Review the student&#039;s progress at a formal CS department-style &amp;quot;proposal&amp;quot; presentation; due by the end of fourth academic year&lt;br /&gt;
# Sign off on the student&#039;s research at the public thesis defense presentation; due by the end of fifth academic year&lt;br /&gt;
&lt;br /&gt;
The goal for timing of these events would be one year between each pair.&lt;br /&gt;
&lt;br /&gt;
== NIH-Style PhD Proposals ==&lt;br /&gt;
There are five sections in the NIH grant proposal format relevant to PhD propsals:&lt;br /&gt;
# Vision / Introduction / Summary&lt;br /&gt;
#* A (strictly) one-page summary of the context of your work, the &amp;quot;hole in the web of knowledge&amp;quot; that you perceive in this area, and what you plan to do to fill it.  The page limit seems short but you only need enough background to give a general picture; arguments to establish novelty and significance go in the &#039;&#039;Significance&#039;&#039; section, accompanied with any more specific background required to make those arguments.&lt;br /&gt;
# Contributions&lt;br /&gt;
#* An approximately one-page summary of the specific contributions you intend to make; in other words, deliverables.  Each one needs only a short blurb to describe it, but it should include a sketch of how you intend to &amp;quot;prove&amp;quot; your contribution.&lt;br /&gt;
# Significance&lt;br /&gt;
#* A longer section explaining the significance and novelty of your proposed work, along with any further background you need to provide in order to argue these points.  You need not refer to individual contributions, though that might be useful.  This section should be chock-full of references to back up your arguments.  The level of detail in the descriptions of your proposed work in this section should be between the &#039;&#039;Contributions&#039;&#039; section (where everything&#039;s high-level and you only have a page to fit it all in) and the &#039;&#039;Research Design&#039;&#039; section (where you get into the specifics of each proposed experiment); the emphasis is on impact and context rather than mechanics.&lt;br /&gt;
# Preliminary Work&lt;br /&gt;
#* For a PhD proposal, this may include published work, informal feasibility studies for your various contributions, established relationships with collaborators, or unpublished (and perhaps even unpublishable) work demonstrating your familiarity with the field.  You should try to cover everything that&#039;s relevant at all to your ability to complete the proposed research.&lt;br /&gt;
# Research Design&lt;br /&gt;
#* Talk about the specific experiments you will perform and arrange them into a timeline.  This will likely be a quite long section.&lt;br /&gt;
# References&lt;br /&gt;
&lt;br /&gt;
The &#039;&#039;Contributions&#039;&#039; section should be about one page long, and in total the &#039;&#039;Contributions&#039;&#039;, &#039;&#039;Significance&#039;&#039;, &#039;&#039;Preliminary Work&#039;&#039;, and &#039;&#039;Research Plan&#039;&#039; sections should total no more than ten pages---the NIH is strict about this, and David intends to be, too.  You may take as much space as you need for references.&lt;br /&gt;
&lt;br /&gt;
Some tips from NIH can be found at [http://www.ninds.nih.gov/funding/write_grant_doc.htm How to Write a Research Project Grant Application].&lt;br /&gt;
&lt;br /&gt;
=== NIH-Style Proposal Revisions ===&lt;br /&gt;
&lt;br /&gt;
Unless you get your proposal perfect the first time around, feedback from your committee is likely to require changes at a number of levels.  You are expected to produce a revised proposal based on this feedback.  It should differ from your initial proposal as follows:&lt;br /&gt;
&lt;br /&gt;
# It will have an additional one-page introduction outlining the major criticisms together with how and where you addressed them in the revised proposal.  Typically, this introduction should not argue against a critique, but rather state how it is addressed in the revision.  Sometimes that may mean that a description in the revision is clarified.  Sometimes it means that a piece of the proposal is removed.  Sometimes it means that significant new work must be added to the proposal.  Some interaction with your committee is likely to help in crafting this introduction.&lt;br /&gt;
# The other proposal sections will be revised as outlined in the introduction.  &lt;br /&gt;
# Some mechanism for distinguishing changes (text color, change bars, etc.) must be used to show where any substantive changes were made.&lt;br /&gt;
&lt;br /&gt;
Note that the revised proposal is still subject to the 10-page limit (plus the single introduction page). &lt;br /&gt;
&lt;br /&gt;
NIH has a very similar revision process.  Their guides to writing proposals describe this, if you would like further reading.  This revision process is also very similar to the revision process at many journals.  Example of journal-paper response letters from your colleagues may be enlightening.&lt;br /&gt;
&lt;br /&gt;
=== Evaluation Rubric ===&lt;br /&gt;
David&#039;s rubric for this proposal format follows:&lt;br /&gt;
# Vision&lt;br /&gt;
#* concise&lt;br /&gt;
#* convincing&lt;br /&gt;
# Contributions&lt;br /&gt;
#* contributions clear&lt;br /&gt;
#* evaluations of contributions clear&lt;br /&gt;
# Significance&lt;br /&gt;
#* well established&lt;br /&gt;
#* assertions cited&lt;br /&gt;
#* related well to the literature&lt;br /&gt;
# Research Plan&lt;br /&gt;
#* clear&lt;br /&gt;
#* concise&lt;br /&gt;
#* appropriate scale&lt;br /&gt;
#* no wasted effort&lt;br /&gt;
#* risks identified and sized&lt;br /&gt;
#* contingencies&lt;br /&gt;
&lt;br /&gt;
=== LaTeX Templates ===&lt;br /&gt;
You can copy the files &amp;lt;tt&amp;gt;nih.cls&amp;lt;/tt&amp;gt; and &amp;lt;tt&amp;gt;prop.tex&amp;lt;/tt&amp;gt; in &amp;lt;tt&amp;gt;/pro/graphics/proposals/nih/bisti&amp;lt;/tt&amp;gt; to serve as templates for your proposal, but please don&#039;t modify the originals.&lt;br /&gt;
&lt;br /&gt;
=== Examples ===&lt;br /&gt;
* [[Jadrian Miles]]&#039;s diffusion MRI proposals:&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal original 2009-06-22.pdf‎|Initial proposal]], submitted to his committee summer 2009&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev2 2009-10-15.pdf|Second revision]], prepared fall 2009 in response to committee comments&lt;br /&gt;
** [[:Image:Jadrian Miles PhD Proposal rev3 2010-09-10.pdf|Third revision, dissertation-with-holes-style]], submitted to the department September 2010&lt;br /&gt;
* [http://cs.brown.edu/~wzhou/proposal_wzhou.pdf Wenjin Zhou&#039;s initial diffusion MRI proposal], submitted to her committee summer 2009&lt;br /&gt;
* [[User:Steven_Gomez#NIH-style_Proposal_Drafts | Steven Gomez&#039;s initial proposal]], submitted to dhl in spring 2012&lt;br /&gt;
&lt;br /&gt;
== Grant Proposals ==&lt;br /&gt;
&lt;br /&gt;
Since this brave new world of authentic PhD research proposals is supposed to be modeled after the grant proposal and review process, check out &#039;&#039;[[Write a grant proposal]]&#039;&#039; for more information and examples of how real grant proposals are constructed.&lt;br /&gt;
&lt;br /&gt;
== Older PhD Proposal Examples ==&lt;br /&gt;
&lt;br /&gt;
Most of these example PhD &amp;quot;proposals&amp;quot; from previous years are proposals in the CS department sense: they report on a large body of completed work and propose the completion of the dissertation research.  Some are from biomed, where the format is more similar to David&#039;s.&lt;br /&gt;
&lt;br /&gt;
* [[:Image:Dan Keefe PhD proposal.pdf|Dan Keefe&#039;s visualization PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Tomer Moscovich PhD proposal.pdf|Tomer Moscovich&#039;s graphics PhD proposal]] from 2006&lt;br /&gt;
* [[:Image:Daf phd proposal.pdf|Daniel Acevedo&#039;s visualization PhD proposal]] from 2006 ([[:Image:Daf phd proposal presentation.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Dana Tenneson phd proposal.pdf|Dana Tenneson&#039;s graphics PhD proposal]] from 2007 ([[:Image:Dana Tenneson phd proposal talk.ppt|presentation PPT]])&lt;br /&gt;
* [[:Image:Example biomed-eng PhD proposal by awald.pdf|Andy Wald&#039;s biomedical engineering PhD proposal]] from 2007&lt;br /&gt;
* [[:Image:Evan Leventhal PhD proposal.pdf|Evan Leventhal&#039;s biomedical engineering PhD proposal]] from 2008&lt;br /&gt;
* [[:Image:Pepe&#039;s proposal.pdf|Pepe&#039;s ecology &amp;amp; evolutionary biology PhD proposal]]&lt;br /&gt;
&lt;br /&gt;
[[Category:HOWTO]][[Category:The PhD Process]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6470</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6470"/>
		<updated>2014-01-17T21:24:40Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Spring &#039;13) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] ===&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Improve the prototype to qualify for a submission&lt;br /&gt;
** Submit&lt;br /&gt;
** Getting it out in the wild&lt;br /&gt;
*** Reconnect with neuroscientists here at Brown&lt;br /&gt;
*** Reach out to Allen Brain Institute and Neuroscience Information Framework&lt;br /&gt;
* Network edge uncertainty visualization&lt;br /&gt;
** Draft paper with everything except final analysis results (&#039;&#039;&#039;Jan. 24&#039;&#039;&#039;)&lt;br /&gt;
** Finish running users (&#039;&#039;&#039;Feb. 7&#039;&#039;&#039;)&lt;br /&gt;
** Submit to InfoVis (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Aptima&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Perform temporal analysis on the data (&#039;&#039;&#039;Jan. 31&#039;&#039;&#039;)&lt;br /&gt;
** Submit to VIS (&#039;&#039;&#039;March 31&#039;&#039;&#039;)&lt;br /&gt;
* Thesis proposal&lt;br /&gt;
** Find committee members&lt;br /&gt;
** Finish a draft that has&lt;br /&gt;
*** a realistic timeline from now until defense&lt;br /&gt;
*** detailed plan for at least one paper that could be part of the thesis&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] ===&lt;br /&gt;
&lt;br /&gt;
* Teach CS 0931&lt;br /&gt;
** TA camp starting &#039;&#039;&#039;Jan 16&#039;&#039;&#039;&lt;br /&gt;
** Prepare and practice each lecture and activity&lt;br /&gt;
** Maintain open communication and availability with TAs and students&lt;br /&gt;
** Have fast turn-around on students&#039; grades&lt;br /&gt;
&lt;br /&gt;
* Crowd Eyetracking project&lt;br /&gt;
** Redraft paper without any additional content from CHI submission by &#039;&#039;&#039;Jan 10&#039;&#039;&#039; and circulate&lt;br /&gt;
** Revise as needed and possibly add more eyetracking users&lt;br /&gt;
** Submit to InfoVis: abstract on &#039;&#039;&#039;March 21&#039;&#039;&#039;, full paper on &#039;&#039;&#039;March 31&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Aptima project&lt;br /&gt;
** Incorporate changes to experiment protocol from pilot study&lt;br /&gt;
** Finish running users by &#039;&#039;&#039;Jan 31&#039;&#039;&#039;&lt;br /&gt;
** Finish analysis by &#039;&#039;&#039;Feb 15&#039;&#039;&#039;&lt;br /&gt;
** Draft paper by &#039;&#039;&#039;March 7&#039;&#039;&#039;&lt;br /&gt;
** Submit to VAST: abstract on &#039;&#039;&#039;March 21&#039;&#039;&#039;, full paper on &#039;&#039;&#039;March 31&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
* Misc&lt;br /&gt;
** Submit IRB renewal by &#039;&#039;&#039;Jan 13&#039;&#039;&#039; at the latest&lt;br /&gt;
** Complete CHI 2014 Work-in-Progress Program Committee duties; all wrapped up with meta-reviews by &#039;&#039;&#039;Feb 4&#039;&#039;&#039;&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] ===&lt;br /&gt;
&lt;br /&gt;
* Complete thesis proposal&lt;br /&gt;
* Work on papers&lt;br /&gt;
** Submit a great MICCAI paper (end of Feb)&lt;br /&gt;
** Contribute to Fauxvea infovis submission (end of March)&lt;br /&gt;
* Continue work on neuroimaging collabs&lt;br /&gt;
** Finalize analysis for South Africa analysis&lt;br /&gt;
** Run connectivity analysis with St Louis data&lt;br /&gt;
** Maintain relationship with folks at RIH&lt;br /&gt;
* Complete work outlined in proposal for this term&lt;br /&gt;
** Aim 1 framework developed and submitted&lt;br /&gt;
** Aim 2 code partially developed&lt;br /&gt;
** Aim 3 studies run and progress made on papers&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Summer-Fall 2013|Summer-Fall &#039;13]]&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CS137&amp;diff=6445</id>
		<title>CS137</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CS137&amp;diff=6445"/>
		<updated>2013-10-01T17:21:56Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&#039;&#039;&#039;Virtual Reality Design for Science&#039;&#039;&#039; is a course taught by [[User:David Laidlaw|David Laidlaw]] (from Brown CS) and [[User:Fritz Drury|Fritz Drury]] (from RISD Illustration), with course number CS137, CSCI1370, or ILLUS5303, depending on who you ask.  This course explores the visual and human-computer interaction design process for scientific applications in immersive virtual reality.&lt;br /&gt;
&lt;br /&gt;
This wiki page is a portal for CS137 students to access documents that help them work better in the class, including [[:Category:HOWTO|HOWTOs]] and documentation about [[CavePainting]].  All registered users can edit pages on a wiki like ours, so please [http://vrl.cs.brown.edu/wiki/index.php?title=Special:Userlogin&amp;amp;type=signup&amp;amp;returnto=CS137 sign up] or [http://vrl.cs.brown.edu/wiki/index.php?title=Special:Userlogin&amp;amp;returnto=CS137 log in] so that you can share information with your fellow classmates.&lt;br /&gt;
&lt;br /&gt;
The [http://cs.brown.edu/courses/cs137/calendar.shtml course webpage] contains all official due dates and course information; the content of the wiki is supplementary and is mostly just documentation for the software we use.&lt;br /&gt;
&lt;br /&gt;
To email your classmates, use [mailto:cs137@cs.brown.edu the cs137 class mailing list].&lt;br /&gt;
&lt;br /&gt;
== HOWTOs ==&lt;br /&gt;
For a list of all HOWTOs, see the [[:Category:CavePainting HOWTO|CavePainting HOWTO category page]].&lt;br /&gt;
* [[Run CavePainting from the kiosk]] under normal conditions.&lt;br /&gt;
* [[Use CavePainting]] once you&#039;ve got it started.&lt;br /&gt;
* [[Import images into CavePainting]] to add custom content that you&#039;ve made out in The Real World.&lt;br /&gt;
* [[Troubleshoot CavePainting]] when stuff goes wrong.&lt;br /&gt;
&lt;br /&gt;
[[Category:Courses]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6444</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6444"/>
		<updated>2013-10-01T05:16:25Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer/Fall &#039;13) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] (Fall &#039;13) ===&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Get Mark on board with resource paper drafting&lt;br /&gt;
** Incorporate connectivity data from Allen Brain Atlas&lt;br /&gt;
* Network edge uncertainty visualization&lt;br /&gt;
** Get lab pilot study done before mid-October&lt;br /&gt;
** Refine the study design and run more experiments / analysis to prepare for a VIS&#039;14 paper&lt;br /&gt;
* Aptima&lt;br /&gt;
** Finish prototyping and perform evaluation&lt;br /&gt;
** Draft a viewpoint article on sptial-temporal network patterns.&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Work with others to have a submission on temporal analysis of click data to reveal visualization patterns&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] (Fall &#039;13) ===&lt;br /&gt;
&lt;br /&gt;
* Be a faster paper mill&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Finish Turk experiments and analysis about estimating gaze patterns with the crowd&lt;br /&gt;
** &#039;&#039;&#039;9/18&#039;&#039;&#039;: Submit paper to CHI; get outside input from Jeff Huang&lt;br /&gt;
** &#039;&#039;&#039;mid-October&#039;&#039;&#039;: Decide on other variations to test and run them on Turk/eye-tracker&lt;br /&gt;
** &#039;&#039;&#039;November&#039;&#039;&#039;: Start ToCHI or TVCG submission on other variations&lt;br /&gt;
&lt;br /&gt;
* Collaborations&lt;br /&gt;
** Stay on track with Jian collaboration&lt;br /&gt;
** &#039;&#039;&#039;end-September&#039;&#039;&#039;: Meet to talk about replicating her ranking study with the crowd&lt;br /&gt;
** Aptima: work with Hua and Caroline on turning prototypes into an evaluation, then into a VIS &#039;14 paper&lt;br /&gt;
&lt;br /&gt;
* Prepare for CS 0931 in the spring&lt;br /&gt;
** Collect examples, project ideas, data sources&lt;br /&gt;
** Get permissions/access to old materials through tstaff&lt;br /&gt;
** Stay on schedule with administrative details, recruiting TAs, etc.&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] (Fall &#039;13) ===&lt;br /&gt;
&lt;br /&gt;
* Submit a thesis proposal&lt;br /&gt;
* Be a good TA for CS137&lt;br /&gt;
* Give good talks at MICCAI&lt;br /&gt;
* Contribute to crowdsourcing paper&lt;br /&gt;
* Keep up with St. Louis folks&lt;br /&gt;
* Define and start South Africa analysis&lt;br /&gt;
* Keep up contact with Dan&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Submit VIS poster using 237 data&lt;br /&gt;
* Run paper prototype study&lt;br /&gt;
* Implement client/server cancer analysis tool capable of serving dynamic views&lt;br /&gt;
* Carry MTurk experiment from perception class as far as deemed fit&lt;br /&gt;
* Help IVRG MTurk project wrap up&lt;br /&gt;
&lt;br /&gt;
Important dates:&lt;br /&gt;
* June 13-25: San Francisco; working ~9-5 M-F with e-mail access&lt;br /&gt;
* June 27: Poster deadline&lt;br /&gt;
* July 13-August 5: Ghana (Volta Region, Accra, Cape Coast); limited to no e-mail access&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* get Jadrian graduated&lt;br /&gt;
* Cave operational by end of summer&lt;br /&gt;
** at least front wall, with blending and Cave Painting&lt;br /&gt;
* excellent cs237&lt;br /&gt;
* prep for cool, new(ish?) cs16 for Spring&lt;br /&gt;
* December Expeditions in Computing submission&lt;br /&gt;
* volume rendering interaction in WristVis&lt;br /&gt;
* brain metrics papers out with Ryan&lt;br /&gt;
* longer-term funding matched with group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Continue construction of the new Cave as parts arrive&lt;br /&gt;
* Complete 1-3 demos for the Cave (not from scratch - adapting code from other sources)&lt;br /&gt;
** some of: Tom Banchoff, Mandelbox Fractal, Music Visualizer&lt;br /&gt;
** Have running in the Cave by the end of the summer&lt;br /&gt;
* Work on one long-term Cave project of use to scientists&lt;br /&gt;
** understand the science behind the simulation or tool&lt;br /&gt;
** develop and maintain a good relationship with scientists to encourage further productive use of the Cave.&lt;br /&gt;
* Prepare for GREs, take in August.&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Maintain CMCOA pipeline&lt;br /&gt;
** Fix SIGUSR1 issue and asssociated radius registration issues&lt;br /&gt;
** Provide troubleshooting and fix bugs if they arise - including the recent problems with the linux upgrade&lt;br /&gt;
* Install levmar and use to replace NAG library calls within CMCOA pipeline&lt;br /&gt;
* Work at making CIT-side portion of pipeline more user-friendly so that it is accessible to people without linux and programming experience&lt;br /&gt;
* Assist with construction of Cave &lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
*Finish new CAVE construction&lt;br /&gt;
*Get ParaView working on both  the new CAVE and the old one&lt;br /&gt;
*Get CavePainting (and other VRG3D applications by extension) working on both  the new CAVE and the old one&lt;br /&gt;
*Speak with faculty interested in working with the CAVE and compile a list of interests&lt;br /&gt;
*Work with different VR frameworks and get them running in the CAVE&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6443</id>
		<title>Plans and Goals</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Plans_and_Goals&amp;diff=6443"/>
		<updated>2013-10-01T05:15:24Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: /* Current Plans and Goals (Summer &amp;#039;13) */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;On this page the members of the [[VRL]] record and refine their goals for the current semester.  This is a living document in which [[dhl]] will provide feedback.  See the bottom of the page for links to past plans &amp;amp; goals documents.&lt;br /&gt;
&lt;br /&gt;
== Current Schedule ==&lt;br /&gt;
Meetings are on Mondays.  The authoritative list is in dhl&#039;s calendar.&lt;br /&gt;
&lt;br /&gt;
== Current Plans and Goals (Summer &#039;13) ==&lt;br /&gt;
&lt;br /&gt;
=== [[User:Hua Guo|Hua]] (Fall &#039;13) ===&lt;br /&gt;
* BraiNet&lt;br /&gt;
** Get Mark on board with resource paper drafting&lt;br /&gt;
** Incorporate connectivity data from Allen Brain Atlas&lt;br /&gt;
* Network edge uncertainty visualization&lt;br /&gt;
** Get lab pilot study done before mid-October&lt;br /&gt;
** Refine the study design and run more experiments / analysis to prepare for a VIS&#039;14 paper&lt;br /&gt;
* Aptima&lt;br /&gt;
** Finish prototyping and perform evaluation&lt;br /&gt;
** Draft a viewpoint article on sptial-temporal network patterns.&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Work with others to have a submission on temporal analysis of click data to reveal visualization patterns&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven Gomez|Steve]] (Fall &#039;13) ===&lt;br /&gt;
&lt;br /&gt;
* Be a faster paper mill&lt;br /&gt;
* Crowd-based visualization evaluation&lt;br /&gt;
** Finish Turk experiments and analysis about estimating gaze patterns with the crowd&lt;br /&gt;
** &#039;&#039;&#039;9/18&#039;&#039;&#039;: Submit paper to CHI; get outside input from Jeff Huang&lt;br /&gt;
** &#039;&#039;&#039;mid-October&#039;&#039;&#039;: Decide on other variations to test and run them on Turk/eye-tracker&lt;br /&gt;
** &#039;&#039;&#039;November&#039;&#039;&#039;: Start ToCHI or TVCG submission on other variations&lt;br /&gt;
&lt;br /&gt;
* Collaborations&lt;br /&gt;
** Stay on track with Jian collaboration&lt;br /&gt;
** &#039;&#039;&#039;end-September&#039;&#039;&#039;: Meet to talk about replicating her ranking study with the crowd&lt;br /&gt;
** Aptima: work with Hua and Caroline on turning prototypes into an evaluation, then into a VIS &#039;14 paper&lt;br /&gt;
&lt;br /&gt;
* Prepare for CS 0931 in the spring&lt;br /&gt;
** Collect examples, project ideas, data sources&lt;br /&gt;
** Get permissions/access to old materials through tstaff&lt;br /&gt;
** Stay on schedule with administrative details, recruiting TAs, etc.&lt;br /&gt;
&lt;br /&gt;
=== [[User:Ryan Cabeen|Ryan]] (Fall &#039;13) ===&lt;br /&gt;
&lt;br /&gt;
* Submit a thesis proposal&lt;br /&gt;
* Be a good TA for CS137&lt;br /&gt;
* Give good talks at MICCAI&lt;br /&gt;
* Contribute to crowdsourcing paper&lt;br /&gt;
* Keep up with St. Louis folks&lt;br /&gt;
* Define and start South Africa analysis&lt;br /&gt;
* Keep up contact with Dan&lt;br /&gt;
&lt;br /&gt;
=== [[User:Connor Gramazio|Connor]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Submit VIS poster using 237 data&lt;br /&gt;
* Run paper prototype study&lt;br /&gt;
* Implement client/server cancer analysis tool capable of serving dynamic views&lt;br /&gt;
* Carry MTurk experiment from perception class as far as deemed fit&lt;br /&gt;
* Help IVRG MTurk project wrap up&lt;br /&gt;
&lt;br /&gt;
Important dates:&lt;br /&gt;
* June 13-25: San Francisco; working ~9-5 M-F with e-mail access&lt;br /&gt;
* June 27: Poster deadline&lt;br /&gt;
* July 13-August 5: Ghana (Volta Region, Accra, Cape Coast); limited to no e-mail access&lt;br /&gt;
&lt;br /&gt;
=== [[User:David Laidlaw|David]] ===&lt;br /&gt;
&lt;br /&gt;
* get Jadrian graduated&lt;br /&gt;
* Cave operational by end of summer&lt;br /&gt;
** at least front wall, with blending and Cave Painting&lt;br /&gt;
* excellent cs237&lt;br /&gt;
* prep for cool, new(ish?) cs16 for Spring&lt;br /&gt;
* December Expeditions in Computing submission&lt;br /&gt;
* volume rendering interaction in WristVis&lt;br /&gt;
* brain metrics papers out with Ryan&lt;br /&gt;
* longer-term funding matched with group&lt;br /&gt;
&lt;br /&gt;
=== [[User:Anne Kenyon|Anne]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Continue construction of the new Cave as parts arrive&lt;br /&gt;
* Complete 1-3 demos for the Cave (not from scratch - adapting code from other sources)&lt;br /&gt;
** some of: Tom Banchoff, Mandelbox Fractal, Music Visualizer&lt;br /&gt;
** Have running in the Cave by the end of the summer&lt;br /&gt;
* Work on one long-term Cave project of use to scientists&lt;br /&gt;
** understand the science behind the simulation or tool&lt;br /&gt;
** develop and maintain a good relationship with scientists to encourage further productive use of the Cave.&lt;br /&gt;
* Prepare for GREs, take in August.&lt;br /&gt;
&lt;br /&gt;
=== [[User:Steven McGarty| Steven]] ===&lt;br /&gt;
Goals&lt;br /&gt;
* Maintain CMCOA pipeline&lt;br /&gt;
** Fix SIGUSR1 issue and asssociated radius registration issues&lt;br /&gt;
** Provide troubleshooting and fix bugs if they arise - including the recent problems with the linux upgrade&lt;br /&gt;
* Install levmar and use to replace NAG library calls within CMCOA pipeline&lt;br /&gt;
* Work at making CIT-side portion of pipeline more user-friendly so that it is accessible to people without linux and programming experience&lt;br /&gt;
* Assist with construction of Cave &lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== [[User:Wesley Miller|Wesley]] ===&lt;br /&gt;
&lt;br /&gt;
*Finish new CAVE construction&lt;br /&gt;
*Get ParaView working on both  the new CAVE and the old one&lt;br /&gt;
*Get CavePainting (and other VRG3D applications by extension) working on both  the new CAVE and the old one&lt;br /&gt;
*Speak with faculty interested in working with the CAVE and compile a list of interests&lt;br /&gt;
*Work with different VR frameworks and get them running in the CAVE&lt;br /&gt;
&lt;br /&gt;
&amp;lt;!-- please don&#039;t edit below this line --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
----&lt;br /&gt;
&lt;br /&gt;
== Past Plans and Goals ==&lt;br /&gt;
* [[/Spring 2013|Spring &#039;13]]&lt;br /&gt;
* [[/Fall 2012|Fall &#039;12]]&lt;br /&gt;
* [[/Summer 2012|Summer &#039;12]]&lt;br /&gt;
* [[/Spring 2012|Spring &#039;12]]&lt;br /&gt;
* [[/Summer-Fall 2011|Summer-Fall &#039;11]]&lt;br /&gt;
* [[/Spring 2011|Spring &#039;11]]&lt;br /&gt;
* [[/Summer-Fall 2010|Summer-Fall &#039;10]]&lt;br /&gt;
* [[/Spring 2010|Spring &#039;10]]&lt;br /&gt;
* [[/Fall 2009|Fall &#039;09]]&lt;br /&gt;
* [[/Summer 2009|Summer &#039;09]]&lt;br /&gt;
* [[/Spring 2009|Spring &#039;09]]&lt;br /&gt;
* [[/Fall 2008|Fall &#039;08]]&lt;br /&gt;
* [http://sites.google.com/a/vis.cs.brown.edu/collaboravis/Home/summer-08-group-goals Summer &#039;08]&lt;br /&gt;
&lt;br /&gt;
[[Category:VRL]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6440</id>
		<title>Run CavePainting from the kiosk</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6440"/>
		<updated>2013-09-22T23:56:44Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This pages describes the design of the Cave system and tells you how to start and clean up Cavepainting sessions at Granoff in Studio 4.  &lt;br /&gt;
&lt;br /&gt;
=The Cave System=&lt;br /&gt;
&lt;br /&gt;
This system consists an 8x8x8 cube environment with the following elements.&lt;br /&gt;
&lt;br /&gt;
===Computers===&lt;br /&gt;
&lt;br /&gt;
The computer directly adjacent to the cube is a touch-sensitive Windows 8 machine known as &amp;quot;the kiosk&amp;quot;.  This is the only computer you&#039;ll need to use to access the Cave--all others are for supporting systems.  The main interface for the Cave is a web browser that consists of a set of tabbed panels and buttons.  Each tab contains a set of programs to run in the Cave.  The &amp;quot;Video Config&amp;quot; and &amp;quot;Cavepainting&amp;quot; tabs are the only ones we&#039;ll use--the others are available for other courses that use the system.   &lt;br /&gt;
&lt;br /&gt;
===Wands===&lt;br /&gt;
&lt;br /&gt;
There are two wands for authoring content and interacting with your scene.  The black wand is for use in your dominant hand and a white wand for your other hand.  These are both hard to replace, so please be careful not to drop or otherwise damage them.   Only the bottom trigger button on each wand is used in Cavepainting.  The black wand has a power button on the right side of the top panel, which should light up when pressed.  The white wand has a switch on bottom of the back panel, which should also light up when turned on.  The black wand will power down automatically; however, the white wand should be turned off manually (to avoid making an enemy of the next person in the Cave :)&lt;br /&gt;
&lt;br /&gt;
===Glasses===&lt;br /&gt;
&lt;br /&gt;
The stereoscopic glasses allow the rendered scene to be selectively shown to each eye and synchronize with the refresh rate of the projectors.  One special pair of glasses has a fixture of sticks and ball, which is used for tracking the position of the users head.  Other glasses will work, but there may be strange effects in the viewed scene from perspective distortions.  The closer others are to the head-tracked glasses, the more accurate the view will be.  Each pair of glasses has a button for turning it on that is located on near the right temple.  The button is pressure sensitive and requires squeezing hard.&lt;br /&gt;
&lt;br /&gt;
=Starting and Stopping Cavepainting=&lt;br /&gt;
&lt;br /&gt;
===Start the program===&lt;br /&gt;
* Navigate the kiosk to the browser interface&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tap the &amp;quot;Cave On&amp;quot; button&lt;br /&gt;
* Tap the &amp;quot;Cavepainting&amp;quot; tab&lt;br /&gt;
* Tap the button associated with your user account&lt;br /&gt;
* Swipe the screen left to right to get to the desktop.  Be sure to start the swipe from the outside of the screen&lt;br /&gt;
* Tap the virtual keyboard icon&lt;br /&gt;
* Tap the VRG3D window to give it focus&lt;br /&gt;
&lt;br /&gt;
===Prepare the hardware===&lt;br /&gt;
* Orient the tracking glasses so they are looking at front wall of the Cave&lt;br /&gt;
* Squeeze (hard) the right temple of the frame until the lenses turn grayish in color&lt;br /&gt;
* Check that they are tracking and synchronized by walking around the Cave&lt;br /&gt;
* Turn on the black wand&lt;br /&gt;
* Turn on the white wand&lt;br /&gt;
* Turn off the room lights (to the right of the exit)&lt;br /&gt;
* Enjoy!&lt;br /&gt;
&lt;br /&gt;
===Stopping Cavepainting===&lt;br /&gt;
* Save your amazing work (you should already be doing this to back things up!)&lt;br /&gt;
* Turn off the white wand (the black will go off automatically)&lt;br /&gt;
* Turn off the glasses by squeezing the right temple until the lenses turn greenish&lt;br /&gt;
* Tap the skull and crossbones icon in the kiosk browser&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tab the &amp;quot;Cave off&amp;quot; button&lt;br /&gt;
&lt;br /&gt;
If you have any trouble, check out [[Troubleshoot CavePainting]] for what to try next.&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6439</id>
		<title>Run CavePainting from the kiosk</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6439"/>
		<updated>2013-09-22T23:50:00Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This pages describes the design of the Cave system and tells you how to start and clean up Cavepainting sessions at Granoff in Studio 4.  &lt;br /&gt;
&lt;br /&gt;
=The Cave System=&lt;br /&gt;
&lt;br /&gt;
This system consists an 8x8x8 cube environment with the following elements.&lt;br /&gt;
&lt;br /&gt;
===Computers===&lt;br /&gt;
&lt;br /&gt;
The computer directly adjacent to the cube is a touch-sensitive Windows 8 machine known as &amp;quot;the kiosk&amp;quot;.  This is the only computer you&#039;ll need to use to access the Cave--all others are for supporting systems.  The main interface for the Cave is a web browser that consists of a set of tabbed panels and buttons.  Each tab contains a set of programs to run in the Cave.  The &amp;quot;Video Config&amp;quot; and &amp;quot;Cavepainting&amp;quot; tabs are the only ones we&#039;ll use--the others are available for other courses that use the system.   &lt;br /&gt;
&lt;br /&gt;
===Wands===&lt;br /&gt;
&lt;br /&gt;
There are two wands for authoring content and interacting with your scene.  The black wand is for use in your dominant hand and a white wand for your other hand.  These are both hard to replace, so please be careful not to drop or otherwise damage them.   Only the bottom trigger button on each wand is used in Cavepainting.  The black wand has a power button on the right side of the top panel, which should light up when pressed.  The white wand has a switch on bottom of the back panel, which should also light up when turned on.  The black wand will power down automatically; however, the white wand should be turned off manually (to avoid making an enemy of the next person in the Cave :)&lt;br /&gt;
&lt;br /&gt;
===Glasses===&lt;br /&gt;
&lt;br /&gt;
The stereoscopic glasses allow the rendered scene to be selectively shown to each eye and synchronize with the refresh rate of the projectors.  One special pair of glasses has a fixture of sticks and ball, which is used for tracking the position of the users head.  Other glasses will work, but there may be strange effects in the viewed scene from perspective distortions.  The closer others are to the head-tracked glasses, the more accurate the view will be.  Each pair of glasses has a button for turning it on that is located on near the right temple.  The button is pressure sensitive and requires squeezing hard.&lt;br /&gt;
&lt;br /&gt;
=Starting and Stopping Cavepainting=&lt;br /&gt;
&lt;br /&gt;
===Start the program===&lt;br /&gt;
* Navigate the kiosk to the browser interface&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tap the &amp;quot;Cave On&amp;quot; button&lt;br /&gt;
* Tap the &amp;quot;Cavepainting&amp;quot; tab&lt;br /&gt;
* Tap the button associated with your user account&lt;br /&gt;
* Swipe the screen left to right to get to the desktop.  Be sure to start the swipe from the outside of the screen&lt;br /&gt;
* Tap the VRG3D window to give it focus&lt;br /&gt;
&lt;br /&gt;
===Prepare the hardware===&lt;br /&gt;
* Orient the tracking glasses so they are looking at front wall of the Cave&lt;br /&gt;
* Squeeze (hard) the right temple of the frame until the lenses turn grayish in color&lt;br /&gt;
* Check that they are tracking and synchronized by walking around the Cave&lt;br /&gt;
* Turn on the black wand&lt;br /&gt;
* Turn on the white wand&lt;br /&gt;
* Turn off the room lights (to the right of the exit)&lt;br /&gt;
* Enjoy!&lt;br /&gt;
&lt;br /&gt;
===Stopping Cavepainting===&lt;br /&gt;
* Save your amazing work (you should already be doing this to back things up!)&lt;br /&gt;
* Turn off the white wand (the black will go off automatically)&lt;br /&gt;
* Turn off the glasses by squeezing the right temple until the lenses turn greenish&lt;br /&gt;
* Tap the skull and crossbones icon in the kiosk browser&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tab the &amp;quot;Cave off&amp;quot; button&lt;br /&gt;
&lt;br /&gt;
If you have any trouble, check out [[Troubleshoot CavePainting]] for what to try next.&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6438</id>
		<title>Troubleshoot CavePainting</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6438"/>
		<updated>2013-09-22T23:49:27Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;First, make sure that you&#039;re following the procedure to [[run CavePainting from the kiosk]] exactly.  If that all checks out, then continue reading.&lt;br /&gt;
&lt;br /&gt;
== Tips and Tricks ==&lt;br /&gt;
&lt;br /&gt;
If you have trouble navigating away from the browser page, try starting from the outside edge of the screen when swiping.  If the swipe starts within the browser window it will only switch tabs and not move you to the desktop, as expected.&lt;br /&gt;
&lt;br /&gt;
The most useful fix is to simply restart Cavepainting, as follows:&lt;br /&gt;
&lt;br /&gt;
* Navigate to the browser interface by swiping left to right, if it&#039;s not already shown&lt;br /&gt;
* Quit Cavepainting by tapping the skull and crossbones (maybe a couple times) in the kiosk browser interface&lt;br /&gt;
* Start your program as in [[run CavePainting from the kiosk]]&lt;br /&gt;
&lt;br /&gt;
This should solve most problems, such as freezes or tracking issues.&lt;br /&gt;
&lt;br /&gt;
You may also run into a problem where only the front wall updates or a freeze happens after saving a file.  This is likely to be a crash of the VRG3D server on the kiosk.  If this is the case, there will be a Windows error message window that needs to be closed, as follows:&lt;br /&gt;
&lt;br /&gt;
* Swipe left to right on the kiosk until you reach the desktop&lt;br /&gt;
* Check for an error window&lt;br /&gt;
* Close the window&lt;br /&gt;
* Restart Cavepainting as described above&lt;br /&gt;
&lt;br /&gt;
Please [mailto:cabeen@cs.brown.edu let us know] if you encounter this bug, as we&#039;d like to squash it!&lt;br /&gt;
&lt;br /&gt;
== Call for Help ==&lt;br /&gt;
If you can&#039;t fix the problem on your own, try asking someone else.  If you&#039;re in [[CSCI1370]], you can:&lt;br /&gt;
# [mailto:cs137tas@cs.brown.edu email the professors and TA] for general questions about assignments.&lt;br /&gt;
# [mailto:cabeen@cs.brown.edu email Ryan] and [mailto:John_Huffman@brown.edu email John] for technical questions.&lt;br /&gt;
# call Ryan at (323)&amp;amp;nbsp;697-3806 for emergency help.&lt;br /&gt;
&lt;br /&gt;
If you&#039;re just a regular user or you&#039;re a CSCI1370 student who wants to work directly with the [[Cave]] administrators, you can:&lt;br /&gt;
# [mailto:support@ccv.brown.edu email the CCV helpdesk].&lt;br /&gt;
# [mailto:John_Huffman@brown.edu email John]&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting&amp;diff=6436</id>
		<title>CavePainting</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=CavePainting&amp;diff=6436"/>
		<updated>2013-09-19T19:27:37Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;&#039;&#039;&#039;CavePainting&#039;&#039;&#039; is a relatively simple but powerful program for authoring 3D content in a virtual reality system.  As opposed to more traditional CAD or animation style 3D modeling programs, CavePainting is easy to learn and is focused on exploring a style of computer graphics driven by hand-based input, like drawing or painting.&lt;br /&gt;
&lt;br /&gt;
CavePainting is used extensively by the [[CS137]] class, Virtual Reality Design for Science.&lt;br /&gt;
&lt;br /&gt;
A number of guides for using Cavepainting are available here:&lt;br /&gt;
* [[Run CavePainting from the kiosk]]&lt;br /&gt;
* [[Use CavePainting]]&lt;br /&gt;
* [[Import images into CavePainting]]&lt;br /&gt;
* [[Troubleshoot CavePainting]]&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting]][[Category:Software]][[Category:Art and Visualization]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6435</id>
		<title>Troubleshoot CavePainting</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6435"/>
		<updated>2013-09-19T19:26:14Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;First, make sure that you&#039;re following the procedure to [[run CavePainting from the kiosk]] exactly.  If that all checks out, then continue reading.&lt;br /&gt;
&lt;br /&gt;
== Tips and Tricks ==&lt;br /&gt;
&lt;br /&gt;
The most useful fix is to simply restart Cavepainting, as follows:&lt;br /&gt;
&lt;br /&gt;
* Navigate to the browser interface by swiping left to right, if it&#039;s not already shown&lt;br /&gt;
* Quit Cavepainting by tapping the skull and crossbones (maybe a couple times) in the kiosk browser interface&lt;br /&gt;
* Start your program as in [[run CavePainting from the kiosk]]&lt;br /&gt;
&lt;br /&gt;
This should solve most problems, such as freezes or tracking issues.&lt;br /&gt;
&lt;br /&gt;
You may also run into a problem where only the front wall updates or a freeze happens after saving a file.  This is likely to be a crash of the VRG3D server on the kiosk.  If this is the case, there will be a Windows error message window that needs to be closed, as follows:&lt;br /&gt;
&lt;br /&gt;
* Swipe left to right on the kiosk until you reach the desktop&lt;br /&gt;
* Check for an error window&lt;br /&gt;
* Close the window&lt;br /&gt;
* Restart Cavepainting as described above&lt;br /&gt;
&lt;br /&gt;
Please [mailto:cabeen@cs.brown.edu let us know] if you encounter this bug, as we&#039;d like to squash it!&lt;br /&gt;
&lt;br /&gt;
== Call for Help ==&lt;br /&gt;
If you can&#039;t fix the problem on your own, try asking someone else.  If you&#039;re in [[CSCI1370]], you can:&lt;br /&gt;
# [mailto:cs137tas@cs.brown.edu email the professors and TA] for general questions about assignments.&lt;br /&gt;
# [mailto:cabeen@cs.brown.edu email Ryan] and [mailto:John_Huffman@brown.edu email John] for technical questions.&lt;br /&gt;
# call Ryan at (323)&amp;amp;nbsp;697-3806 for emergency help.&lt;br /&gt;
&lt;br /&gt;
If you&#039;re just a regular user or you&#039;re a CSCI1370 student who wants to work directly with the [[Cave]] administrators, you can:&lt;br /&gt;
# [mailto:support@ccv.brown.edu email the CCV helpdesk].&lt;br /&gt;
# [mailto:John_Huffman@brown.edu email John]&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6434</id>
		<title>Troubleshoot CavePainting</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Troubleshoot_CavePainting&amp;diff=6434"/>
		<updated>2013-09-19T19:25:46Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;First, make sure that you&#039;re following the procedure to [[run CavePainting from the kiosk]] exactly.  If that all checks out, then continue reading.&lt;br /&gt;
&lt;br /&gt;
The most useful fix is to simply restart Cavepainting, as follows:&lt;br /&gt;
&lt;br /&gt;
* Navigate to the browser interface by swiping left to right, if it&#039;s not already shown&lt;br /&gt;
* Quit Cavepainting by tapping the skull and crossbones (maybe a couple times) in the kiosk browser interface&lt;br /&gt;
* Start your program as in [[run CavePainting from the kiosk]]&lt;br /&gt;
&lt;br /&gt;
This should solve most problems, such as freezes or tracking issues.&lt;br /&gt;
&lt;br /&gt;
You may also run into a problem where only the front wall updates or a freeze happens after saving a file.  This is likely to be a crash of the VRG3D server on the kiosk.  If this is the case, there will be a Windows error message window that needs to be closed, as follows:&lt;br /&gt;
&lt;br /&gt;
* Swipe left to right on the kiosk until you reach the desktop&lt;br /&gt;
* Check for an error window&lt;br /&gt;
* Close the window&lt;br /&gt;
* Restart Cavepainting as described above&lt;br /&gt;
&lt;br /&gt;
Please [mailto:cabeen@cs.brown.edu let us know] if you encounter this bug, as we&#039;d like to squash it!&lt;br /&gt;
&lt;br /&gt;
== Call for Help ==&lt;br /&gt;
If you can&#039;t fix the problem on your own, try asking someone else.  If you&#039;re in [[CSCI1370]], you can:&lt;br /&gt;
# [mailto:cs137tas@cs.brown.edu email the professors and TA] for general questions about assignments.&lt;br /&gt;
# [mailto:cabeen@cs.brown.edu email Ryan] and [mailto:John_Huffman@brown.edu email John] for technical questions.&lt;br /&gt;
# call Ryan at (323)&amp;amp;nbsp;697-3806 for emergency help.&lt;br /&gt;
&lt;br /&gt;
If you&#039;re just a regular user or you&#039;re a CSCI1370 student who wants to work directly with the [[Cave]] administrators, you can:&lt;br /&gt;
# [mailto:support@ccv.brown.edu email the CCV helpdesk].&lt;br /&gt;
# [mailto:John_Huffman@brown.edu email John]&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
	<entry>
		<id>http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6433</id>
		<title>Run CavePainting from the kiosk</title>
		<link rel="alternate" type="text/html" href="http://vrl.cs.brown.edu/wiki/index.php?title=Run_CavePainting_from_the_kiosk&amp;diff=6433"/>
		<updated>2013-09-19T19:25:03Z</updated>

		<summary type="html">&lt;p&gt;Ryan Cabeen: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;This pages describes the design of the Cave system and tells you how to start and clean up Cavepainting sessions at Granoff in Studio 4.  &lt;br /&gt;
&lt;br /&gt;
=The Cave System=&lt;br /&gt;
&lt;br /&gt;
This system consists an 8x8x8 cube environment with the following elements.&lt;br /&gt;
&lt;br /&gt;
===Computers===&lt;br /&gt;
&lt;br /&gt;
The computer directly adjacent to the cube is a touch-sensitive Windows 8 machine known as &amp;quot;the kiosk&amp;quot;.  This is the only computer you&#039;ll need to use to access the Cave--all others are for supporting systems.  The main interface for the Cave is a web browser that consists of a set of tabbed panels and buttons.  Each tab contains a set of programs to run in the Cave.  The &amp;quot;Video Config&amp;quot; and &amp;quot;Cavepainting&amp;quot; tabs are the only ones we&#039;ll use--the others are available for other courses that use the system.   &lt;br /&gt;
&lt;br /&gt;
===Wands===&lt;br /&gt;
&lt;br /&gt;
There are two wands for authoring content and interacting with your scene.  The black wand is for use in your dominant hand and a white wand for your other hand.  These are both hard to replace, so please be careful not to drop or otherwise damage them.   Only the bottom trigger button on each wand is used in Cavepainting.  The black wand has a power button on the right side of the top panel, which should light up when pressed.  The white wand has a switch on bottom of the back panel, which should also light up when turned on.  The black wand will power down automatically; however, the white wand should be turned off manually (to avoid making an enemy of the next person in the Cave :)&lt;br /&gt;
&lt;br /&gt;
===Glasses===&lt;br /&gt;
&lt;br /&gt;
The stereoscopic glasses allow the rendered scene to be selectively shown to each eye and synchronize with the refresh rate of the projectors.  One special pair of glasses has a fixture of sticks and ball, which is used for tracking the position of the users head.  Other glasses will work, but there may be strange effects in the viewed scene from perspective distortions.  The closer others are to the head-tracked glasses, the more accurate the view will be.  Each pair of glasses has a button for turning it on that is located on near the right temple.  The button is pressure sensitive and requires squeezing hard.&lt;br /&gt;
&lt;br /&gt;
=Starting and Stopping Cavepainting=&lt;br /&gt;
&lt;br /&gt;
===Start the program===&lt;br /&gt;
* Navigate the kiosk to the browser interface&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tap the &amp;quot;Cave On&amp;quot; button&lt;br /&gt;
* Tap the &amp;quot;Cavepainting&amp;quot; tab&lt;br /&gt;
* Tap the button associated with your user account&lt;br /&gt;
* Swipe the screen left to right to get to the desktop&lt;br /&gt;
* Tap the VRG3D window to give it focus&lt;br /&gt;
&lt;br /&gt;
===Prepare the hardware===&lt;br /&gt;
* Orient the tracking glasses so they are looking at front wall of the Cave&lt;br /&gt;
* Squeeze (hard) the right temple of the frame until the lenses turn grayish in color&lt;br /&gt;
* Check that they are tracking and synchronized by walking around the Cave&lt;br /&gt;
* Turn on the black wand&lt;br /&gt;
* Turn on the white wand&lt;br /&gt;
* Turn off the room lights (to the right of the exit)&lt;br /&gt;
* Enjoy!&lt;br /&gt;
&lt;br /&gt;
===Stopping Cavepainting===&lt;br /&gt;
* Save your amazing work (you should already be doing this to back things up!)&lt;br /&gt;
* Turn off the white wand (the black will go off automatically)&lt;br /&gt;
* Turn off the glasses by squeezing the right temple until the lenses turn greenish&lt;br /&gt;
* Tap the skull and crossbones icon in the kiosk browser&lt;br /&gt;
* Tap the &amp;quot;Video Config&amp;quot; tab&lt;br /&gt;
* Tab the &amp;quot;Cave off&amp;quot; button&lt;br /&gt;
&lt;br /&gt;
If you have any trouble, check out [[Troubleshoot CavePainting]] for what to try next.&lt;br /&gt;
&lt;br /&gt;
[[Category:CavePainting HOWTO]]&lt;/div&gt;</summary>
		<author><name>Ryan Cabeen</name></author>
	</entry>
</feed>